› 7f12

X-ray diffraction
3.15Å resolution

A SARS-CoV-2 neutralizing antibody

Released:
DOI: 10.2210/pdb7f12/pdb
PDB entry 7f12 coloured by chain, front view.
PDB entry 7f12 coloured by chain, side view.
PDB entry 7f12 coloured by chain, top view.
Source organisms:
Entry authors: Zhang G, Li X, Guo Y, Wang Y, Yuan S

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-209760 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Spike protein S1 Chain: A
Molecule details ›
Chain: A
Length: 206 amino acids
Theoretical weight: 23.19 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P0DTC2 (Residues: 334-528; Coverage: 16%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding
Antibody Chain: B
Molecule details ›
Chain: B
Length: 253 amino acids
Theoretical weight: 27.46 KDa
Source organism: Mus musculus
Expression system: Spodoptera frugiperda

Ligands and Environments

1 bound ligand:
Ligand NAG 1 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P3121
Unit cell:
a: 75.46Å b: 75.46Å c: 184.135Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.2 0.195 0.245
Expression system: Spodoptera frugiperda

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