7ki5

X-ray diffraction
1.52Å resolution

Crystal structure of P[6] rotavirus vp8* in complex with LNT

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-571427 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Outer capsid protein VP4 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 160 amino acids
Theoretical weight: 18.54 KDa
Source organism: Human rotavirus A
Expression system: Escherichia coli
UniProt:
  • Canonical: Q91E88 (Residues: 53-212; Coverage: 58%)
Gene name: VP4
Sequence domains: Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain

Ligands and Environments

Carbohydrate polymer : NEW Components: BGC, GAL, NAG
2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P21
Unit cell:
a: 56.681Å b: 75.354Å c: 74.411Å
α: 90° β: 91.77° γ: 90°
R-values:
R R work R free
0.175 0.174 0.196
Expression system: Escherichia coli