7tht

Electron Microscopy
3.42Å resolution

CryoEM structure of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1042

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-535427 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (5 distinct):
Spike glycoprotein Chains: C, S, V
Molecule details ›
Chains: C, S, V
Length: 1121 amino acids
Theoretical weight: 124.13 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 27-1147; Coverage: 89%)
Gene names: 2, S
Sequence domains:
DH1042 heavy chain Chains: H, a, d
Molecule details ›
Chains: H, a, d
Length: 122 amino acids
Theoretical weight: 13.48 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
DH1042 light chain Chains: L, b, c
Molecule details ›
Chains: L, b, c
Length: 106 amino acids
Theoretical weight: 11.43 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.42Å
Relevant EMDB volumes: EMD-25904
Expression system: Homo sapiens