7u60

X-ray diffraction
2.55Å resolution

Integrin alpha IIB beta3 complex with cRGDfV

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-529062 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (7 distinct):
Integrin alpha-IIb heavy chain Chains: A, C
Molecule details ›
Chains: A, C
Length: 455 amino acids
Theoretical weight: 49.36 KDa
Source organism: Homo sapiens
Expression system: Cricetulus griseus
UniProt:
  • Canonical: P08514 (Residues: 32-486; Coverage: 45%)
Gene names: GP2B, ITGA2B, ITGAB
Sequence domains: FG-GAP repeat
Integrin beta-3 Chains: B, D
Molecule details ›
Chains: B, D
Length: 471 amino acids
Theoretical weight: 51.96 KDa
Source organism: Homo sapiens
Expression system: Cricetulus griseus
UniProt:
  • Canonical: P05106 (Residues: 27-497; Coverage: 62%)
Gene names: GP3A, ITGB3
Sequence domains:
Fab heavy chain Chains: E, H
Molecule details ›
Chains: E, H
Length: 216 amino acids
Theoretical weight: 23.34 KDa
Source organism: Mus musculus
Fab light chain Chains: F, L
Molecule details ›
Chains: F, L
Length: 214 amino acids
Theoretical weight: 23.33 KDa
Source organism: Mus musculus
ARG-GLY-ASP-DPN-VAL Chains: M, N
Molecule details ›
Chains: M, N
Length: 5 amino acids
Theoretical weight: 594 Da
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, MAN
Carbohydrate polymer : NEW Components: NAG
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: P21212
Unit cell:
a: 260.89Å b: 145.77Å c: 105.16Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.188 0.225
Expression systems:
  • Cricetulus griseus
  • Not provided