› 7zbe

X-ray diffraction
1.8Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136077 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Rhodopsin Chains: A, B
Molecule details ›
Chains: A, B
Length: 348 amino acids
Theoretical weight: 39.03 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P02699 (Residues: 1-348; Coverage: 100%)
Gene name: RHO
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
6 bound ligands:
Ligand ACE 2 x ACE
Ligand RET 2 x RET
Ligand NAG 2 x NAG
Ligand DAO 1 x DAO
Ligand OLC 13 x OLC
Ligand PLM 2 x PLM
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SwissFEL ARAMIS BEAMLINE ESA
Unit cell:
a: 61.51Å b: 91.01Å c: 151.11Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.215 0.215 0.247

Quick links

Citations

3 review citations

A short story on how chromophore is hydrolyzed from rhodopsin for recycling.
Hong et al. (2023)
2 more

2 mentions without citation

Ultrafast structural changes direct the first molecular events of vision.
Gruhl et al. (2023)
1 more