› 7ae7

X-ray diffraction
2.66Å resolution

Structure of Sedimentibacter hydroxybenzoicus vanillic acid decarboxylase (ShVdcCD) in open form, with truncated ShVdcD (V59X)

Released:
DOI: 10.2210/pdb7ae7/pdb
PDB entry 7ae7 coloured by chain, front view.
PDB entry 7ae7 coloured by chain, side view.
PDB entry 7ae7 coloured by chain, top view.
Source organism: Sedimentibacter hydroxybenzoicus
Entry authors: Marshall SA, Leys D

Function and Biology Details

Reactions catalysed: 
4-hydroxybenzoate = phenol + CO(2)
3,4-dihydroxybenzoate = catechol + CO(2)
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dodecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-175743 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Phenolic acid decarboxylase Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 480 amino acids
Theoretical weight: 54.02 KDa
Source organism: Sedimentibacter hydroxybenzoicus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9S4M7 (Residues: 1-480; Coverage: 100%)
Gene names: ohb1, shdC
Sequence domains:
Protein ShdD Chains: a, b, c, d, e, f
Molecule details ›
Chains: a, b, c, d, e, f
Length: 58 amino acids
Theoretical weight: 6.71 KDa
Source organism: Sedimentibacter hydroxybenzoicus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q4R102 (Residues: 1-58; Coverage: 85%)
Gene name: shdD

Ligands and Environments

2 bound ligands:
Ligand NA 5 x NA
Ligand ZN 6 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I24
Spacegroup: P212121
Unit cell:
a: 101.553Å b: 200.945Å c: 201.991Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.18 0.227
Expression system: Escherichia coli BL21(DE3)

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