› 7b62

X-ray diffraction
1.82Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-144160 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Spike protein S1 Chain: A
Molecule details ›
Chain: A
Length: 322 amino acids
Theoretical weight: 36.39 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-311; Coverage: 24%)
Gene names: 2, S
Sequence domains: Betacoronavirus-like spike glycoprotein S1, N-terminal

Ligands and Environments

6 bound ligands:
Ligand BLA 1 x BLA
Ligand NAG 7 x NAG
Ligand PG4 2 x PG4
Ligand PEG 3 x PEG
Ligand PGE 3 x PGE
Ligand 1PE 1 x 1PE
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: C2221
Unit cell:
a: 98.07Å b: 100.19Å c: 85.97Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.166 0.164 0.2
Expression system: Homo sapiens

Quick links

Citations

10 review citations

Monoclonal antibodies for COVID-19 therapy and SARS-CoV-2 detection.
Hwang et al. (2022)
9 more

15 mentions without citation

Antibody-mediated immunity to SARS-CoV-2 spike.
Errico et al. (2022)
14 more