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Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Source organism: Saccharomyces cerevisiae S288C
Biochemical function: protein binding
Biological process: rRNA processing
Cellular component: nucleolus

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EC 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1

Reaction catalysed:
S-adenosyl-L-methionine + pseudouridine(1191) in yeast 18S rRNA = S-adenosyl-L-homocysteine + N(1)-methylpseudouridine(1191) in yeast 18S rRNA
Systematic name:
S-adenosyl-L-methionine:18S rRNA (pseudouridine(1191)-N(1))-methyltransferase
Alternative Name(s):
  • Nep1
  • Nucleolar essential protein 1

EC 3.6.4.13: RNA helicase

Reaction catalysed:
ATP + H(2)O = ADP + phosphate
Systematic name:
ATP phosphohydrolase (RNA helix unwinding)
Alternative Name(s):
  • CSFV NS3 helicase
  • DBP2
  • DDX17
  • DDX25
  • DDX3
  • DDX3X
  • DDX3Y
  • DDX4
  • DDX5
  • DEAD-box RNA helicase
  • DEAD-box protein DED1
  • DEAH-box RNA helicase
  • DEAH-box protein 2
  • DED1
  • DbpA
  • Dex(H/D) RNA helicase
  • EIF4A helicase
  • EhDEAD1
  • EhDEAD1 RNA helicase
  • GRTH/DDX25
  • KOKV helicase
  • Mtr4p
  • NPH-II
  • Nonstructural protein 3 helicase
  • RHA
  • RNA helicase A
  • RNA helicase DDX3
  • RNA helicase Hera
  • RNA-dependent ATPase
  • TGBp1 NTPase/helicase domain
  • VRH1

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00400
Domain description: WD domain, G-beta repeat
Occurring in:
  1. Ribosomal RNA-processing protein 9
  2. U3 small nucleolar RNA-associated protein 7
  3. Protein SOF1
  4. U3 small nucleolar RNA-associated protein 4
  5. U3 small nucleolar RNA-associated protein 15
  6. NET1-associated nuclear protein 1
  7. Periodic tryptophan protein 2
  8. U3 small nucleolar RNA-associated protein 12
  9. U3 small nucleolar RNA-associated protein 13
  10. U3 small nucleolar RNA-associated protein 18
  11. U3 small nucleolar RNA-associated protein 21
The deposited structure of PDB entry 7d4i contains 2 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in Ribosomal RNA-processing protein 9. Showing 2 copies in chain Z [auth 3F].
The deposited structure of PDB entry 7d4i contains 2 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in U3 small nucleolar RNA-associated protein 4. Showing 2 copies in chain CA [auth A4].
The deposited structure of PDB entry 7d4i contains 3 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in U3 small nucleolar RNA-associated protein 15. Showing 3 copies in chain HA [auth AF].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00400 (WD domain, G-beta repeat) in NET1-associated nuclear protein 1. Showing 1 copy in chain IA [auth AG].
The deposited structure of PDB entry 7d4i contains 5 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in Periodic tryptophan protein 2. Showing 5 copies in chain JA [auth B1].
The deposited structure of PDB entry 7d4i contains 10 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in U3 small nucleolar RNA-associated protein 12. Showing 10 copies in chain KA [auth B2].
The deposited structure of PDB entry 7d4i contains 7 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in U3 small nucleolar RNA-associated protein 13. Showing 7 copies in chain LA [auth B3].
The deposited structure of PDB entry 7d4i contains 2 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in U3 small nucleolar RNA-associated protein 18. Showing 2 copies in chain MA [auth B8].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00400 (WD domain, G-beta repeat) in U3 small nucleolar RNA-associated protein 21. Showing 1 copy in chain NA [auth BE].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00400 (WD domain, G-beta repeat) in U3 small nucleolar RNA-associated protein 7. Showing 1 copy in chain QA [auth 5C].
The deposited structure of PDB entry 7d4i contains 5 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in Protein SOF1. Showing 5 copies in chain WA [auth 5I].

PF01138
Domain description: 3' exoribonuclease family, domain 1
Occurring in:
  1. Exosome complex component MTR3
  2. Exosome complex component SKI6
  3. Exosome complex component RRP43
  4. Exosome complex component RRP45
  5. Exosome complex component RRP46
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01138 (3' exoribonuclease family, domain 1) in Exosome complex component RRP45. Showing 1 copy in chain QB [auth R5].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01138 (3' exoribonuclease family, domain 1) in Exosome complex component SKI6. Showing 1 copy in chain RB [auth R1].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01138 (3' exoribonuclease family, domain 1) in Exosome complex component RRP43. Showing 1 copy in chain SB [auth R3].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01138 (3' exoribonuclease family, domain 1) in Exosome complex component RRP46. Showing 1 copy in chain TB [auth R6].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01138 (3' exoribonuclease family, domain 1) in Exosome complex component MTR3. Showing 1 copy in chain VB [auth M3].

PF00575
Domain description: S1 RNA binding domain
Occurring in:
  1. rRNA biogenesis protein RRP5
The deposited structure of PDB entry 7d4i contains 3 copies of Pfam domain PF00575 (S1 RNA binding domain) in rRNA biogenesis protein RRP5. Showing 3 copies in chain ZA [auth RD] (some of the copies are out of the observed residue ranges!).

PF03725
Domain description: 3' exoribonuclease family, domain 2
Occurring in:
  1. Exosome complex component SKI6
  2. Exosome complex component RRP45
  3. Exosome complex component RRP46
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF03725 (3' exoribonuclease family, domain 2) in Exosome complex component RRP45. Showing 1 copy in chain QB [auth R5].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF03725 (3' exoribonuclease family, domain 2) in Exosome complex component SKI6. Showing 1 copy in chain RB [auth R1].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF03725 (3' exoribonuclease family, domain 2) in Exosome complex component RRP46. Showing 1 copy in chain TB [auth R6].

PF04003
Domain description: Dip2/Utp12 Family
Occurring in:
  1. U3 small nucleolar RNA-associated protein 5
  2. Periodic tryptophan protein 2
  3. U3 small nucleolar RNA-associated protein 12
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04003 (Dip2/Utp12 Family) in U3 small nucleolar RNA-associated protein 5. Showing 1 copy in chain DA [auth A5].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04003 (Dip2/Utp12 Family) in Periodic tryptophan protein 2. Showing 1 copy in chain JA [auth B1].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04003 (Dip2/Utp12 Family) in U3 small nucleolar RNA-associated protein 12. Showing 1 copy in chain KA [auth B2].

PF01479
Domain description: S4 domain
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP3
  2. Small ribosomal subunit protein eS4A
  3. Small ribosomal subunit protein uS4A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01479 (S4 domain) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain E [auth SF].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01479 (S4 domain) in Small ribosomal subunit protein uS4A. Showing 1 copy in chain J [auth SK].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01479 (S4 domain) in U3 small nucleolar ribonucleoprotein protein IMP3. Showing 1 copy in chain TA [auth 5F].

PF04147
Domain description: Nop14-like family
Occurring in:
  1. Nucleolar complex protein 14
The deposited structure of PDB entry 7d4i contains 2 copies of Pfam domain PF04147 (Nop14-like family ) in Nucleolar complex protein 14. Showing 2 copies in chain GB [auth RN].

PF03587
Domain description: EMG1/NEP1 methyltransferase
Occurring in:
  1. Ribosomal RNA small subunit methyltransferase NEP1
The deposited structure of PDB entry 7d4i contains 2 copies of Pfam domain PF03587 (EMG1/NEP1 methyltransferase) in Ribosomal RNA small subunit methyltransferase NEP1. Showing 1 copy in chain DB [auth RH].

PF15985
Domain description: KH domain
Occurring in:
  1. Exosome complex component RRP40
  2. Exosome complex component RRP4
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF15985 (KH domain) in Exosome complex component RRP40. Showing 1 copy in chain WB [auth R0].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF15985 (KH domain) in Exosome complex component RRP4. Showing 1 copy in chain XB [auth r4].

PF00271
Domain description: Helicase conserved C-terminal domain
Occurring in:
  1. ATP-dependent RNA helicase DOB1
  2. Probable ATP-dependent RNA helicase DHR1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00271 (Helicase conserved C-terminal domain) in Probable ATP-dependent RNA helicase DHR1. Showing 1 copy in chain NB [auth RZ].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00271 (Helicase conserved C-terminal domain) in ATP-dependent RNA helicase DOB1. Showing 1 copy in chain CC [auth M4].

PF00270
Domain description: DEAD/DEAH box helicase
Occurring in:
  1. ATP-dependent RNA helicase DOB1
  2. Probable ATP-dependent RNA helicase DHR1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00270 (DEAD/DEAH box helicase) in Probable ATP-dependent RNA helicase DHR1. Showing 1 copy in chain NB [auth RZ].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00270 (DEAD/DEAH box helicase) in ATP-dependent RNA helicase DOB1. Showing 1 copy in chain CC [auth M4].

PF05843
Domain description: Suppressor of forked protein (Suf)
Occurring in:
  1. U3 small nucleolar RNA-associated protein 6
  2. rRNA biogenesis protein RRP5

PF04000
Domain description: Sas10/Utp3/C1D family
Occurring in:
  1. Something about silencing protein 10
  2. Exosome complex protein LRP1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04000 (Sas10/Utp3/C1D family) in Something about silencing protein 10. Showing 1 copy in chain VA [auth 5H] (this domain is out of the observed residue ranges!).
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04000 (Sas10/Utp3/C1D family) in Exosome complex protein LRP1. Showing 1 copy in chain BC [auth R7].

PF00163
Domain description: Ribosomal protein S4/S9 N-terminal domain
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP3
  2. Small ribosomal subunit protein uS4A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00163 (Ribosomal protein S4/S9 N-terminal domain) in Small ribosomal subunit protein uS4A. Showing 1 copy in chain J [auth SK].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00163 (Ribosomal protein S4/S9 N-terminal domain) in U3 small nucleolar ribonucleoprotein protein IMP3. Showing 1 copy in chain TA [auth 5F].

PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. 13 kDa ribonucleoprotein-associated protein
The deposited structure of PDB entry 7d4i contains 2 copies of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in 13 kDa ribonucleoprotein-associated protein. Showing 1 copy in chain AA [auth 3G].

PF01798
Domain description: snoRNA binding domain, fibrillarin
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01798 (snoRNA binding domain, fibrillarin) in Nucleolar protein 56. Showing 1 copy in chain X [auth 3D].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01798 (snoRNA binding domain, fibrillarin) in Nucleolar protein 58. Showing 1 copy in chain Y [auth 3E].

PF08156
Domain description: NOP5NT (NUC127) domain
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08156 (NOP5NT (NUC127) domain) in Nucleolar protein 56. Showing 1 copy in chain X [auth 3D].
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08156 (NOP5NT (NUC127) domain) in Nucleolar protein 58. Showing 1 copy in chain Y [auth 3E].

PF01269
Domain description: Fibrillarin
Occurring in:
  1. rRNA 2'-O-methyltransferase fibrillarin
The deposited structure of PDB entry 7d4i contains 2 copies of Pfam domain PF01269 (Fibrillarin) in rRNA 2'-O-methyltransferase fibrillarin. Showing 1 copy in chain V [auth 3B].

PF00570
Domain description: HRDC domain
Occurring in:
  1. Exosome complex exonuclease RRP6
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00570 (HRDC domain) in Exosome complex exonuclease RRP6. Showing 1 copy in chain AC [auth r6] (this domain is out of the observed residue ranges!).

PF01612
Domain description: 3'-5' exonuclease
Occurring in:
  1. Exosome complex exonuclease RRP6
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01612 (3'-5' exonuclease) in Exosome complex exonuclease RRP6. Showing 1 copy in chain AC [auth r6].

PF08066
Domain description: PMC2NT (NUC016) domain
Occurring in:
  1. Exosome complex exonuclease RRP6
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08066 (PMC2NT (NUC016) domain) in Exosome complex exonuclease RRP6. Showing 1 copy in chain AC [auth r6].

PF21266
Domain description: RRP4, S1 domain
Occurring in:
  1. Exosome complex component RRP4
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF21266 (RRP4, S1 domain) in Exosome complex component RRP4. Showing 1 copy in chain XB [auth r4].

PF14382
Domain description: Exosome complex exonuclease RRP4 N-terminal region
Occurring in:
  1. Exosome complex component RRP4
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF14382 (Exosome complex exonuclease RRP4 N-terminal region) in Exosome complex component RRP4. Showing 1 copy in chain XB [auth r4].

PF01200
Domain description: Ribosomal protein S28e
Occurring in:
  1. Small ribosomal subunit protein eS28A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01200 (Ribosomal protein S28e) in Small ribosomal subunit protein eS28A. Showing 1 copy in chain U [auth Sd].

PF01667
Domain description: Ribosomal protein S27
Occurring in:
  1. Small ribosomal subunit protein eS27A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01667 (Ribosomal protein S27) in Small ribosomal subunit protein eS27A. Showing 1 copy in chain T [auth Sc].

PF01282
Domain description: Ribosomal protein S24e
Occurring in:
  1. Small ribosomal subunit protein eS24A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01282 (Ribosomal protein S24e) in Small ribosomal subunit protein eS24A. Showing 1 copy in chain S [auth SZ].

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in Small ribosomal subunit protein uS12A. Showing 1 copy in chain R [auth SY].

PF00410
Domain description: Ribosomal protein S8
Occurring in:
  1. Small ribosomal subunit protein uS8B
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00410 (Ribosomal protein S8) in Small ribosomal subunit protein uS8B. Showing 1 copy in chain Q [auth SX].

PF01090
Domain description: Ribosomal protein S19e
Occurring in:
  1. Small ribosomal subunit protein eS19A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01090 (Ribosomal protein S19e) in Small ribosomal subunit protein eS19A. Showing 1 copy in chain P [auth SU].

PF00416
Domain description: Ribosomal protein S13/S18
Occurring in:
  1. Small ribosomal subunit protein uS13A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00416 (Ribosomal protein S13/S18) in Small ribosomal subunit protein uS13A. Showing 1 copy in chain O [auth ST].

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Small ribosomal subunit protein uS9A. Showing 1 copy in chain N [auth SR].

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Small ribosomal subunit protein uS11A. Showing 1 copy in chain M [auth SP].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15. Showing 1 copy in chain L [auth SO].

PF08069
Domain description: Ribosomal S13/S15 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08069 (Ribosomal S13/S15 N-terminal domain) in Small ribosomal subunit protein uS15. Showing 1 copy in chain L [auth SO].

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in Small ribosomal subunit protein uS17A. Showing 1 copy in chain K [auth SM].

PF16205
Domain description: Ribosomal_S17 N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS17A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF16205 (Ribosomal_S17 N-terminal) in Small ribosomal subunit protein uS17A. Showing 1 copy in chain K [auth SM].

PF01201
Domain description: Ribosomal protein S8e
Occurring in:
  1. Small ribosomal subunit protein eS8A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01201 (Ribosomal protein S8e) in Small ribosomal subunit protein eS8A. Showing 1 copy in chain I [auth SJ].

PF01251
Domain description: Ribosomal protein S7e
Occurring in:
  1. Small ribosomal subunit protein eS7A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01251 (Ribosomal protein S7e) in Small ribosomal subunit protein eS7A. Showing 1 copy in chain H [auth SI].

PF01092
Domain description: Ribosomal protein S6e
Occurring in:
  1. Small ribosomal subunit protein eS6A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01092 (Ribosomal protein S6e) in Small ribosomal subunit protein eS6A. Showing 1 copy in chain G [auth SH].

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7. Showing 1 copy in chain F [auth SG].

PF16121
Domain description: 40S ribosomal protein S4 C-terminus
Occurring in:
  1. Small ribosomal subunit protein eS4A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF16121 (40S ribosomal protein S4 C-terminus) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain E [auth SF].

PF00467
Domain description: KOW motif
Occurring in:
  1. Small ribosomal subunit protein eS4A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00467 (KOW motif) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain E [auth SF].

PF00900
Domain description: Ribosomal family S4e
Occurring in:
  1. Small ribosomal subunit protein eS4A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00900 (Ribosomal family S4e) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain E [auth SF].

PF08071
Domain description: RS4NT (NUC023) domain
Occurring in:
  1. Small ribosomal subunit protein eS4A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08071 (RS4NT (NUC023) domain) in Small ribosomal subunit protein eS4A. Showing 1 copy in chain E [auth SF].

PF01015
Domain description: Ribosomal S3Ae family
Occurring in:
  1. Small ribosomal subunit protein eS1A
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01015 (Ribosomal S3Ae family) in Small ribosomal subunit protein eS1A. Showing 1 copy in chain D [auth SC].

PF07717
Domain description: Oligonucleotide/oligosaccharide-binding (OB)-fold
Occurring in:
  1. Probable ATP-dependent RNA helicase DHR1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF07717 (Oligonucleotide/oligosaccharide-binding (OB)-fold) in Probable ATP-dependent RNA helicase DHR1. Showing 1 copy in chain NB [auth RZ].

PF21010
Domain description: Helicase associated domain (HA2), ratchet-like
Occurring in:
  1. Probable ATP-dependent RNA helicase DHR1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF21010 (Helicase associated domain (HA2), ratchet-like) in Probable ATP-dependent RNA helicase DHR1. Showing 1 copy in chain NB [auth RZ].

PF04408
Domain description: Helicase associated domain (HA2), winged-helix
Occurring in:
  1. Probable ATP-dependent RNA helicase DHR1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04408 (Helicase associated domain (HA2), winged-helix) in Probable ATP-dependent RNA helicase DHR1. Showing 1 copy in chain NB [auth RZ].

PF17075
Domain description: Regular of rDNA transcription protein 14
Occurring in:
  1. Regulator of rDNA transcription protein 14
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17075 (Regular of rDNA transcription protein 14) in Regulator of rDNA transcription protein 14. Showing 1 copy in chain MB [auth RW].

PF05291
Domain description: Bystin
Occurring in:
  1. Essential nuclear protein 1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF05291 (Bystin) in Essential nuclear protein 1. Showing 1 copy in chain KB [auth RS].

PF04615
Domain description: Utp14 protein
Occurring in:
  1. U3 small nucleolar RNA-associated protein 14
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04615 (Utp14 protein) in U3 small nucleolar RNA-associated protein 14. Showing 1 copy in chain JB [auth RQ].

PF20416
Domain description: U3 small nucleolar RNA-associated protein 20, C-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 20
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF20416 (U3 small nucleolar RNA-associated protein 20, C-terminal) in U3 small nucleolar RNA-associated protein 20. Showing 1 copy in chain IB [auth RP].

PF07539
Domain description: U3 small nucleolar RNA-associated protein 20, N-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 20
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF07539 (U3 small nucleolar RNA-associated protein 20, N-terminal) in U3 small nucleolar RNA-associated protein 20. Showing 1 copy in chain IB [auth RP].

PF03914
Domain description: CBF/Mak21 family
Occurring in:
  1. Nucleolar complex protein 4
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF03914 (CBF/Mak21 family) in Nucleolar complex protein 4. Showing 1 copy in chain HB [auth RO].

PF05189
Domain description: RNA 3'-terminal phosphate cyclase (RTC), insert domain
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF05189 (RNA 3'-terminal phosphate cyclase (RTC), insert domain) in RNA 3'-terminal phosphate cyclase-like protein. Showing 1 copy in chain FB [auth RK].

PF01137
Domain description: RNA 3'-terminal phosphate cyclase
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF01137 (RNA 3'-terminal phosphate cyclase) in RNA 3'-terminal phosphate cyclase-like protein. Showing 1 copy in chain FB [auth RK].

PF04950
Domain description: 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Occurring in:
  1. Ribosome biogenesis protein BMS1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04950 (40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal) in Ribosome biogenesis protein BMS1. Showing 1 copy in chain EB [auth RJ].

PF08142
Domain description: AARP2CN (NUC121) domain
Occurring in:
  1. Ribosome biogenesis protein BMS1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08142 (AARP2CN (NUC121) domain) in Ribosome biogenesis protein BMS1. Showing 1 copy in chain EB [auth RJ].

PF00004
Domain description: ATPase family associated with various cellular activities (AAA)
Occurring in:
  1. Ribosome biogenesis protein BMS1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00004 (ATPase family associated with various cellular activities (AAA)) in Ribosome biogenesis protein BMS1. Showing 1 copy in chain EB [auth RJ].

PF12923
Domain description: Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Occurring in:
  1. Ribosomal RNA-processing protein 7
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF12923 (Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain) in Ribosomal RNA-processing protein 7. Showing 1 copy in chain BB [auth RF].

PF17799
Domain description: Rrp7 RRM-like N-terminal domain
Occurring in:
  1. Ribosomal RNA-processing protein 7
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17799 (Rrp7 RRM-like N-terminal domain) in Ribosomal RNA-processing protein 7. Showing 1 copy in chain BB [auth RF].

PF17407
Domain description: Nrap protein domain 6
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17407 (Nrap protein domain 6) in U3 small nucleolar RNA-associated protein 22. Showing 1 copy in chain AB [auth RE].

PF17406
Domain description: Nrap protein PAP/OAS1-like domain 5
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17406 (Nrap protein PAP/OAS1-like domain 5) in U3 small nucleolar RNA-associated protein 22. Showing 1 copy in chain AB [auth RE].

PF17405
Domain description: Nrap protein nucleotidyltransferase domain 4
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17405 (Nrap protein nucleotidyltransferase domain 4) in U3 small nucleolar RNA-associated protein 22. Showing 1 copy in chain AB [auth RE].

PF17404
Domain description: Nrap protein domain 3
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17404 (Nrap protein domain 3) in U3 small nucleolar RNA-associated protein 22. Showing 1 copy in chain AB [auth RE].

PF17403
Domain description: Nrap protein PAP/OAS-like domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17403 (Nrap protein PAP/OAS-like domain) in U3 small nucleolar RNA-associated protein 22. Showing 1 copy in chain AB [auth RE].

PF03813
Domain description: Nrap protein domain 1
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF03813 (Nrap protein domain 1) in U3 small nucleolar RNA-associated protein 22. Showing 1 copy in chain AB [auth RE].

PF17215
Domain description: S1 domain
Occurring in:
  1. Exosome complex exonuclease DIS3
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17215 (S1 domain) in Exosome complex exonuclease DIS3. Showing 1 copy in chain ZB [auth R4].

PF00773
Domain description: RNB domain
Occurring in:
  1. Exosome complex exonuclease DIS3
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF00773 (RNB domain) in Exosome complex exonuclease DIS3. Showing 1 copy in chain ZB [auth R4].

PF17849
Domain description: Dis3-like cold-shock domain 2 (CSD2)
Occurring in:
  1. Exosome complex exonuclease DIS3
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17849 (Dis3-like cold-shock domain 2 (CSD2)) in Exosome complex exonuclease DIS3. Showing 1 copy in chain ZB [auth R4].

PF17216
Domain description: Rrp44-like cold shock domain
Occurring in:
  1. Exosome complex exonuclease DIS3
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF17216 (Rrp44-like cold shock domain) in Exosome complex exonuclease DIS3. Showing 1 copy in chain ZB [auth R4].

PF13638
Domain description: PIN domain
Occurring in:
  1. Exosome complex exonuclease DIS3
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF13638 (PIN domain) in Exosome complex exonuclease DIS3. Showing 1 copy in chain ZB [auth R4].

PF21262
Domain description: Exosome complex component RRP40, S1 domain
Occurring in:
  1. Exosome complex component RRP40
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF21262 (Exosome complex component RRP40, S1 domain) in Exosome complex component RRP40. Showing 1 copy in chain WB [auth R0].

PF18311
Domain description: Exosome complex exonuclease Rrp40 N-terminal domain
Occurring in:
  1. Exosome complex component RRP40
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF18311 (Exosome complex exonuclease Rrp40 N-terminal domain) in Exosome complex component RRP40. Showing 1 copy in chain WB [auth R0].

PF10175
Domain description: M-phase phosphoprotein 6
Occurring in:
  1. M-phase phosphoprotein 6 homolog
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF10175 (M-phase phosphoprotein 6) in M-phase phosphoprotein 6 homolog. Showing 1 copy in chain DC [auth M6].

PF08148
Domain description: DSHCT (NUC185) domain
Occurring in:
  1. ATP-dependent RNA helicase DOB1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08148 (DSHCT (NUC185) domain) in ATP-dependent RNA helicase DOB1. Showing 1 copy in chain CC [auth M4].

PF13234
Domain description: Mtr4-like, beta-barrel domain
Occurring in:
  1. ATP-dependent RNA helicase DOB1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF13234 (Mtr4-like, beta-barrel domain) in ATP-dependent RNA helicase DOB1. Showing 1 copy in chain CC [auth M4].

PF21408
Domain description: Exosome RNA helicase MTR4-like, stalk
Occurring in:
  1. ATP-dependent RNA helicase DOB1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF21408 (Exosome RNA helicase MTR4-like, stalk) in ATP-dependent RNA helicase DOB1. Showing 1 copy in chain CC [auth M4].

PF10447
Domain description: Exosome component EXOSC1/CSL4
Occurring in:
  1. Exosome complex component CSL4
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF10447 (Exosome component EXOSC1/CSL4) in Exosome complex component CSL4. Showing 1 copy in chain YB [auth C4].

PF21551
Domain description: Exosome complex component CSL4, N-terminal domain
Occurring in:
  1. Exosome complex component CSL4
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF21551 (Exosome complex component CSL4, N-terminal domain) in Exosome complex component CSL4. Showing 1 copy in chain YB [auth C4].

PF04192
Domain description: Utp21 specific WD40 associated putative domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 21
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04192 (Utp21 specific WD40 associated putative domain ) in U3 small nucleolar RNA-associated protein 21. Showing 1 copy in chain NA [auth BE].

PF08640
Domain description: U3 small nucleolar RNA-associated protein 6
Occurring in:
  1. U3 small nucleolar RNA-associated protein 6
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08640 (U3 small nucleolar RNA-associated protein 6) in U3 small nucleolar RNA-associated protein 6. Showing 1 copy in chain OA [auth B6].

PF08625
Domain description: Utp13 specific WD40 associated domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 13
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08625 (Utp13 specific WD40 associated domain) in U3 small nucleolar RNA-associated protein 13. Showing 1 copy in chain LA [auth B3].

PF09384
Domain description: UTP15 C terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 15
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF09384 (UTP15 C terminal) in U3 small nucleolar RNA-associated protein 15. Showing 1 copy in chain HA [auth AF].

PF08146
Domain description: BP28CT (NUC211) domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08146 (BP28CT (NUC211) domain) in U3 small nucleolar RNA-associated protein 10. Showing 1 copy in chain GA [auth AE].

PF12397
Domain description: U3 small nucleolar RNA-associated protein 10
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF12397 (U3 small nucleolar RNA-associated protein 10 ) in U3 small nucleolar RNA-associated protein 10. Showing 1 copy in chain GA [auth AE].

PF22542
Domain description: Utp8, C-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 8

PF10395
Domain description: Utp8, N-terminal beta propeller
Occurring in:
  1. U3 small nucleolar RNA-associated protein 8
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF10395 (Utp8 family) in U3 small nucleolar RNA-associated protein 8. Showing 1 copy in chain EA [auth A8].

PF04900
Domain description: Fcf1
Occurring in:
  1. rRNA-processing protein FCF1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04900 (Fcf1) in rRNA-processing protein FCF1. Showing 1 copy in chain YA [auth 5K].

PF08698
Domain description: Fcf2 pre-rRNA processing
Occurring in:
  1. rRNA-processing protein FCF2
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08698 (Fcf2 pre-rRNA processing) in rRNA-processing protein FCF2. Showing 1 copy in chain XA [auth 5J].

PF04158
Domain description: Sof1-like domain
Occurring in:
  1. Protein SOF1
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04158 (Sof1-like domain ) in Protein SOF1. Showing 1 copy in chain WA [auth 5I].

PF09368
Domain description: Sas10 C-terminal domain
Occurring in:
  1. Something about silencing protein 10
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF09368 (Sas10 C-terminal domain) in Something about silencing protein 10. Showing 1 copy in chain VA [auth 5H].

PF04427
Domain description: Brix domain
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP4
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04427 (Brix domain) in U3 small nucleolar ribonucleoprotein protein IMP4. Showing 1 copy in chain UA [auth 5G].

PF04006
Domain description: Mpp10 protein
Occurring in:
  1. U3 small nucleolar RNA-associated protein MPP10
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF04006 (Mpp10 protein) in U3 small nucleolar RNA-associated protein MPP10. Showing 1 copy in chain SA [auth 5E].

PF03998
Domain description: Utp11 protein
Occurring in:
  1. U3 small nucleolar RNA-associated protein 11
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF03998 (Utp11 protein) in U3 small nucleolar RNA-associated protein 11. Showing 1 copy in chain RA [auth 5D].

PF08149
Domain description: BING4CT (NUC141) domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 7
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08149 (BING4CT (NUC141) domain) in U3 small nucleolar RNA-associated protein 7. Showing 1 copy in chain QA [auth 5C].

PF08297
Domain description: U3 snoRNA associated
Occurring in:
  1. U3 small nucleolar RNA-associated protein 16
The deposited structure of PDB entry 7d4i contains 1 copy of Pfam domain PF08297 (U3 snoRNA associated) in U3 small nucleolar RNA-associated protein 16. Showing 1 copy in chain PA [auth 5B].

Rfam RNA families (Rfam)
RF01846
Domain description: Fungal small nucleolar RNA U3
Occurring in:
  1. U3 snoRNA
The deposited structure of PDB entry 7d4i contains 1 copy of Rfam domain RF01846 (Fungal small nucleolar RNA U3) in U3 snoRNA. Showing 1 copy in chain A [auth 3A].

RF01960
Domain description: Eukaryotic small subunit ribosomal RNA
Occurring in:
  1. 18S Ribosomal RNA
The deposited structure of PDB entry 7d4i contains 1 copy of Rfam domain RF01960 (Eukaryotic small subunit ribosomal RNA) in 18S Ribosomal RNA. Showing 1 copy in chain C [auth SA].

InterPro InterPro annotations
IPR001680
Domain description: WD40 repeat
Occurring in:
  1. Ribosomal RNA-processing protein 9
  2. U3 small nucleolar RNA-associated protein 7
  3. Protein SOF1
  4. U3 small nucleolar RNA-associated protein 4
  5. U3 small nucleolar RNA-associated protein 15
  6. NET1-associated nuclear protein 1
  7. Periodic tryptophan protein 2
  8. U3 small nucleolar RNA-associated protein 12
  9. U3 small nucleolar RNA-associated protein 13
  10. U3 small nucleolar RNA-associated protein 18
  11. U3 small nucleolar RNA-associated protein 21
IPR012340
Domain description: Nucleic acid-binding, OB-fold
Occurring in:
  1. Exosome complex component CSL4
  2. Exosome complex component RRP40
  3. Exosome complex exonuclease DIS3
  4. rRNA biogenesis protein RRP5
  5. Small ribosomal subunit protein uS17A
  6. Small ribosomal subunit protein uS12A
  7. Small ribosomal subunit protein eS28A
  8. Exosome complex component RRP4
IPR015943
Domain description: WD40/YVTN repeat-like-containing domain superfamily
Occurring in:
  1. Ribosomal RNA-processing protein 9
  2. U3 small nucleolar RNA-associated protein 7
  3. Protein SOF1
  4. U3 small nucleolar RNA-associated protein 4
  5. U3 small nucleolar RNA-associated protein 5
  6. U3 small nucleolar RNA-associated protein 9
  7. U3 small nucleolar RNA-associated protein 15
  8. NET1-associated nuclear protein 1
  9. Periodic tryptophan protein 2
  10. U3 small nucleolar RNA-associated protein 12
  11. U3 small nucleolar RNA-associated protein 13
  12. U3 small nucleolar RNA-associated protein 18
  13. U3 small nucleolar RNA-associated protein 21
IPR000692
Domain description: rRNA 2'-O-methyltransferase fibrillarin-like
Occurring in:
  1. rRNA 2'-O-methyltransferase fibrillarin
IPR003029
Domain description: S1 domain
Occurring in:
  1. Exosome complex exonuclease DIS3
  2. rRNA biogenesis protein RRP5
IPR036322
Domain description: WD40-repeat-containing domain superfamily
Occurring in:
  1. Ribosomal RNA-processing protein 9
  2. U3 small nucleolar RNA-associated protein 7
  3. Protein SOF1
  4. U3 small nucleolar RNA-associated protein 4
  5. U3 small nucleolar RNA-associated protein 5
  6. U3 small nucleolar RNA-associated protein 15
  7. NET1-associated nuclear protein 1
  8. Periodic tryptophan protein 2
  9. U3 small nucleolar RNA-associated protein 12
  10. U3 small nucleolar RNA-associated protein 13
  11. U3 small nucleolar RNA-associated protein 18
  12. U3 small nucleolar RNA-associated protein 21
IPR020472
Domain description: G-protein beta WD-40 repeat
Occurring in:
  1. Protein SOF1
  2. Periodic tryptophan protein 2
  3. U3 small nucleolar RNA-associated protein 12
  4. U3 small nucleolar RNA-associated protein 13
IPR019775
Domain description: WD40 repeat, conserved site
Occurring in:
  1. U3 small nucleolar RNA-associated protein 7
  2. U3 small nucleolar RNA-associated protein 15
  3. Periodic tryptophan protein 2
  4. U3 small nucleolar RNA-associated protein 12
  5. U3 small nucleolar RNA-associated protein 13
  6. U3 small nucleolar RNA-associated protein 21
IPR003107
Domain description: HAT (Half-A-TPR) repeat
Occurring in:
  1. U3 small nucleolar RNA-associated protein 6
  2. rRNA biogenesis protein RRP5
IPR027417
Domain description: P-loop containing nucleoside triphosphate hydrolase
Occurring in:
  1. ATP-dependent RNA helicase DOB1
  2. Ribosome biogenesis protein BMS1
  3. Probable ATP-dependent RNA helicase DHR1
IPR018492
Domain description: Ribosomal protein eL8/Nhp2 family
Occurring in:
  1. 13 kDa ribonucleoprotein-associated protein
IPR002415
Domain description: H/ACA ribonucleoprotein complex, subunit Nhp2-like
Occurring in:
  1. 13 kDa ribonucleoprotein-associated protein
IPR020568
Domain description: Ribosomal protein uS5 domain 2-type superfamily
Occurring in:
  1. Exosome complex component MTR3
  2. Exosome complex component SKI6
  3. Exosome complex component RRP42
  4. Exosome complex component RRP43
  5. Exosome complex component RRP45
  6. Exosome complex component RRP46
  7. Small ribosomal subunit protein uS9A
IPR016024
Domain description: Armadillo-type fold
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
  2. U3 small nucleolar RNA-associated protein 20
IPR005304
Domain description: Ribosomal biogenesis, methyltransferase, EMG1/NEP1
Occurring in:
  1. Ribosomal RNA small subunit methyltransferase NEP1
IPR001650
Domain description: Helicase, C-terminal domain-like
Occurring in:
  1. ATP-dependent RNA helicase DOB1
  2. Probable ATP-dependent RNA helicase DHR1
IPR001247
Domain description: Exoribonuclease, phosphorolytic domain 1
Occurring in:
  1. Exosome complex component MTR3
  2. Exosome complex component SKI6
  3. Exosome complex component RRP42
  4. Exosome complex component RRP43
  5. Exosome complex component RRP45
  6. Exosome complex component RRP46
IPR027408
Domain description: PNPase/RNase PH domain superfamily
Occurring in:
  1. Exosome complex component MTR3
  2. Exosome complex component SKI6
  3. Exosome complex component RRP42
  4. Exosome complex component RRP43
  5. Exosome complex component RRP45
  6. Exosome complex component RRP46
IPR002942
Domain description: RNA-binding S4 domain
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP3
  2. Small ribosomal subunit protein eS4A
  3. Small ribosomal subunit protein uS4A
IPR000266
Domain description: Small ribosomal subunit protein uS17
Occurring in:
  1. Small ribosomal subunit protein uS17A
IPR036612
Domain description: K Homology domain, type 1 superfamily
Occurring in:
  1. Exosome complex component RRP40
  2. Pno1
  3. Exosome complex component RRP4
IPR011989
Domain description: Armadillo-like helical
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
  2. U3 small nucleolar RNA-associated protein 20
IPR000289
Domain description: Small ribosomal subunit protein eS28
Occurring in:
  1. Small ribosomal subunit protein eS28A
IPR000592
Domain description: Small ribosomal subunit protein eS27
Occurring in:
  1. Small ribosomal subunit protein eS27A
IPR006032
Domain description: Small ribosomal subunit protein uS12
Occurring in:
  1. Small ribosomal subunit protein uS12A
IPR001892
Domain description: Small ribosomal subunit protein uS13
Occurring in:
  1. Small ribosomal subunit protein uS13A
IPR001971
Domain description: Small ribosomal subunit protein uS11
Occurring in:
  1. Small ribosomal subunit protein uS11A
IPR000589
Domain description: Small ribosomal subunit protein uS15
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR014001
Domain description: Helicase superfamily 1/2, ATP-binding domain
Occurring in:
  1. ATP-dependent RNA helicase DOB1
  2. Probable ATP-dependent RNA helicase DHR1
IPR011990
Domain description: Tetratricopeptide-like helical domain superfamily
Occurring in:
  1. U3 small nucleolar RNA-associated protein 6
  2. rRNA biogenesis protein RRP5
IPR029064
Domain description: Ribosomal protein eL30-like superfamily
Occurring in:
  1. 13 kDa ribonucleoprotein-associated protein
IPR002687
Domain description: Nop domain
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
IPR029063
Domain description: S-adenosyl-L-methionine-dependent methyltransferase superfamily
Occurring in:
  1. rRNA 2'-O-methyltransferase fibrillarin
IPR001976
Domain description: Small ribosomal subunit protein eS24
Occurring in:
  1. Small ribosomal subunit protein eS24A
IPR000630
Domain description: Small ribosomal subunit protein uS8
Occurring in:
  1. Small ribosomal subunit protein uS8B
IPR001266
Domain description: Small ribosomal subunit protein eS19
Occurring in:
  1. Small ribosomal subunit protein eS19A
IPR000876
Domain description: Small ribosomal subunit protein eS4
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR007276
Domain description: Nucleolar protein 14
Occurring in:
  1. Nucleolar complex protein 14
IPR015847
Domain description: Exoribonuclease, phosphorolytic domain 2
Occurring in:
  1. Exosome complex component SKI6
  2. Exosome complex component RRP45
  3. Exosome complex component RRP46
IPR036345
Domain description: Exoribonuclease, PH domain 2 superfamily
Occurring in:
  1. Exosome complex component SKI6
  2. Exosome complex component RRP45
  3. Exosome complex component RRP46
IPR007148
Domain description: Small-subunit processome, Utp12
Occurring in:
  1. U3 small nucleolar RNA-associated protein 5
  2. Periodic tryptophan protein 2
  3. U3 small nucleolar RNA-associated protein 12
IPR002716
Domain description: PIN domain
Occurring in:
  1. rRNA-processing protein FCF1
  2. Exosome complex exonuclease DIS3
IPR007109
Domain description: Brix domain
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP4
IPR036986
Domain description: RNA-binding S4 domain superfamily
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP3
  2. Small ribosomal subunit protein eS4A
  3. Small ribosomal subunit protein uS4A
IPR001912
Domain description: Small ribosomal subunit protein uS4, N-terminal
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP3
  2. Small ribosomal subunit protein uS4A
IPR012173
Domain description: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10
Occurring in:
  1. U3 small nucleolar RNA-associated protein MPP10
IPR002121
Domain description: HRDC domain
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR002562
Domain description: 3'-5' exonuclease domain
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR005680
Domain description: Small ribosomal subunit protein uS12, eukaryotic/archaeal
Occurring in:
  1. Small ribosomal subunit protein uS12A
IPR000754
Domain description: Small ribosomal subunit protein uS9
Occurring in:
  1. Small ribosomal subunit protein uS9A
IPR023029
Domain description: Small ribosomal subunit protein uS15, archaea/eukaryotes
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR001047
Domain description: Small ribosomal subunit protein eS8
Occurring in:
  1. Small ribosomal subunit protein eS8A
IPR000554
Domain description: Small ribosomal subunit protein eS7
Occurring in:
  1. Small ribosomal subunit protein eS7A
IPR001377
Domain description: Small ribosomal subunit protein eS6
Occurring in:
  1. Small ribosomal subunit protein eS6A
IPR005716
Domain description: Ribosomal protein uS7, eukaryotic/archaeal
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR036823
Domain description: Small ribosomal subunit protein uS7 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR000235
Domain description: Small ribosomal subunit protein uS7
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR001593
Domain description: Small ribosomal subunit protein eS1
Occurring in:
  1. Small ribosomal subunit protein eS1A
IPR007502
Domain description: Helicase-associated domain
Occurring in:
  1. Probable ATP-dependent RNA helicase DHR1
IPR007955
Domain description: Bystin
Occurring in:
  1. Essential nuclear protein 1
IPR016443
Domain description: RNA 3'-terminal phosphate cyclase type 2
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR007034
Domain description: Ribosome biogenesis protein BMS1/TSR1, C-terminal
Occurring in:
  1. Ribosome biogenesis protein BMS1
IPR012948
Domain description: AARP2CN
Occurring in:
  1. Ribosome biogenesis protein BMS1
IPR029026
Domain description: tRNA (guanine-N1-)-methyltransferase, N-terminal
Occurring in:
  1. Ribosomal RNA small subunit methyltransferase NEP1
IPR029028
Domain description: Alpha/beta knot methyltransferases
Occurring in:
  1. Ribosomal RNA small subunit methyltransferase NEP1
IPR001900
Domain description: Ribonuclease II/R
Occurring in:
  1. Exosome complex exonuclease DIS3
IPR004088
Domain description: K Homology domain, type 1
Occurring in:
  1. Exosome complex component RRP40
  2. Exosome complex component RRP4
IPR026699
Domain description: Exosome complex RNA-binding protein 1/RRP40/RRP4
Occurring in:
  1. Exosome complex component RRP40
  2. Exosome complex component RRP4
IPR012961
Domain description: ATP-dependent RNA helicase Ski2/MTR4, C-terminal
Occurring in:
  1. ATP-dependent RNA helicase DOB1
IPR011545
Domain description: DEAD/DEAH box helicase domain
Occurring in:
  1. ATP-dependent RNA helicase DOB1
  2. Probable ATP-dependent RNA helicase DHR1
IPR013949
Domain description: U3 small nucleolar RNA-associated protein 6
Occurring in:
  1. U3 small nucleolar RNA-associated protein 6
IPR011047
Domain description: Quinoprotein alcohol dehydrogenase-like superfamily
Occurring in:
  1. Periodic tryptophan protein 2
  2. U3 small nucleolar RNA-associated protein 21
IPR012954
Domain description: BP28, C-terminal domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
IPR029060
Domain description: PIN-like domain superfamily
Occurring in:
  1. rRNA-processing protein FCF1
  2. Exosome complex exonuclease DIS3
IPR007146
Domain description: Sas10/Utp3/C1D
Occurring in:
  1. Something about silencing protein 10
  2. Exosome complex protein LRP1
IPR022801
Domain description: Small ribosomal subunit protein uS4
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP3
  2. Small ribosomal subunit protein uS4A
IPR007144
Domain description: Small-subunit processome, Utp11
Occurring in:
  1. U3 small nucleolar RNA-associated protein 11
IPR012952
Domain description: BING4, C-terminal domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 7
IPR004037
Domain description: Large ribosomal subunit protein eL8-like, conserved site
Occurring in:
  1. 13 kDa ribonucleoprotein-associated protein
IPR004038
Domain description: Ribosomal protein eL8/eL30/eS12/Gadd45
Occurring in:
  1. 13 kDa ribonucleoprotein-associated protein
IPR042239
Domain description: Nop, C-terminal domain
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
IPR012976
Domain description: NOSIC
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
IPR036070
Domain description: Nop domain superfamily
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
IPR045056
Domain description: Nucleolar protein Nop56/Nop58
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
IPR012974
Domain description: Nucleolar protein 58/56, N-terminal
Occurring in:
  1. Nucleolar protein 56
  2. Nucleolar protein 58
IPR020813
Domain description: Fibrillarin, conserved site
Occurring in:
  1. rRNA 2'-O-methyltransferase fibrillarin
IPR044876
Domain description: HRDC domain superfamily
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR010997
Domain description: HRDC-like superfamily
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR012337
Domain description: Ribonuclease H-like superfamily
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR036397
Domain description: Ribonuclease H superfamily
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR012588
Domain description: Exosome-associated factor Rrp6, N-terminal
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR045092
Domain description: Exosome complex exonuclease Rrp6-like
Occurring in:
  1. Exosome complex exonuclease RRP6
IPR025721
Domain description: Exosome complex component, N-terminal domain
Occurring in:
  1. Exosome complex component RRP4
IPR028626
Domain description: Ribosomal protein eS28 conserved site
Occurring in:
  1. Small ribosomal subunit protein eS28A
IPR011332
Domain description: Zinc-binding ribosomal protein
Occurring in:
  1. Small ribosomal subunit protein eS27A
IPR023407
Domain description: Small ribosomal subunit protein eS27, zinc-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein eS27A
IPR018098
Domain description: Small ribosomal subunit protein eS24 conserved site
Occurring in:
  1. Small ribosomal subunit protein eS24A
IPR012678
Domain description: Ribosomal protein uL23/eL15/eS24 core domain superfamily
Occurring in:
  1. Small ribosomal subunit protein eS24A
IPR047863
Domain description: Small ribosomal subunit protein uS8, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS8B
IPR035987
Domain description: Small ribosomal subunit protein uS8 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS8B
IPR018277
Domain description: Small ribosomal subunit protein eS19, conserved site
Occurring in:
  1. Small ribosomal subunit protein eS19A
IPR036390
Domain description: Winged helix DNA-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein eS19A
IPR036388
Domain description: Winged helix-like DNA-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein eS19A
IPR018269
Domain description: Small ribosomal subunit protein uS13, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS13A
IPR027437
Domain description: Small ribosomal subunit protein uS13, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS13A
IPR010979
Domain description: Small ribosomal subunit protein uS13-like, H2TH
Occurring in:
  1. Small ribosomal subunit protein uS13A
IPR020574
Domain description: Small ribosomal subunit protein uS9, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS9A
IPR014721
Domain description: Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
  1. Small ribosomal subunit protein uS9A
IPR018102
Domain description: Small ribosomal subunit protein uS11, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS11A
IPR036967
Domain description: Small ribosomal subunit protein uS11 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS11A
IPR009068
Domain description: uS15/NS1, RNA-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR012606
Domain description: Small ribosomal subunit protein uS15, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS15
IPR019979
Domain description: Small ribosomal subunit protein uS17, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS17A
IPR028333
Domain description: Small ribosomal subunit protein uS17, archaeal/eukaryotic
Occurring in:
  1. Small ribosomal subunit protein uS17A
IPR032440
Domain description: Small ribosomal subunit protein uS17, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS17A
IPR018079
Domain description: Small ribosomal subunit protein uS4, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS4A
IPR005710
Domain description: Small ribosomal subunit protein uS4, eukaryotic/archaeal
Occurring in:
  1. Small ribosomal subunit protein uS4A
IPR042563
Domain description: Small ribosomal subunit protein eS8 subdomain, eukaryotes
Occurring in:
  1. Small ribosomal subunit protein eS8A
IPR018283
Domain description: Small ribosomal subunit protein eS8, conserved site
Occurring in:
  1. Small ribosomal subunit protein eS8A
IPR022309
Domain description: Ribosomal protein eS8/ribosomal biogenesis NSA2
Occurring in:
  1. Small ribosomal subunit protein eS8A
IPR047861
Domain description: Small ribosomal subunit protein eS7, conserved site
Occurring in:
  1. Small ribosomal subunit protein eS7A
IPR018282
Domain description: Small ribosomal subunit protein eS6, conserved site
Occurring in:
  1. Small ribosomal subunit protein eS6A
IPR014401
Domain description: Small ribosomal subunit protein eS6-like
Occurring in:
  1. Small ribosomal subunit protein eS6A
IPR020606
Domain description: Small ribosomal subunit protein uS7, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR023798
Domain description: Small ribosomal subunit protein uS7 domain
Occurring in:
  1. Small ribosomal subunit protein uS7
IPR032277
Domain description: Small ribosomal subunit protein eS4, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR005824
Domain description: KOW
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR041982
Domain description: Small ribosomal subunit protein eS4, KOW domain
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR014722
Domain description: Large ribosomal subunit protein uL2, domain 2
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR038237
Domain description: Small ribosomal subunit protein eS4, central domain superfamily
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR013845
Domain description: Small ribosomal subunit protein eS4, central region
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR018199
Domain description: Small ribosomal subunit protein eS4, N-terminal, conserved site
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR013843
Domain description: Small ribosomal subunit protein eS4, N-terminal
Occurring in:
  1. Small ribosomal subunit protein eS4A
IPR018281
Domain description: Small ribosomal subunit protein eS1, conserved site
Occurring in:
  1. Small ribosomal subunit protein eS1A
IPR027500
Domain description: Small ribosomal subunit protein eS1, eukaryotes
Occurring in:
  1. Small ribosomal subunit protein eS1A
IPR011709
Domain description: DEAD-box helicase, OB fold
Occurring in:
  1. Probable ATP-dependent RNA helicase DHR1
IPR002464
Domain description: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Occurring in:
  1. Probable ATP-dependent RNA helicase DHR1
IPR031404
Domain description: Regulator of rDNA transcription 14
Occurring in:
  1. Regulator of rDNA transcription protein 14
IPR041174
Domain description: KRR1 small subunit processome component, first KH domain
Occurring in:
  1. Pno1
IPR006709
Domain description: Small-subunit processome, Utp14
Occurring in:
  1. U3 small nucleolar RNA-associated protein 14
IPR046523
Domain description: U3 small nucleolar RNA-associated protein 20, C-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 20
IPR011430
Domain description: U3 small nucleolar RNA-associated protein 20, N-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 20
IPR005612
Domain description: CCAAT-binding factor
Occurring in:
  1. Nucleolar complex protein 4
IPR027193
Domain description: Nucleolar complex protein 4
Occurring in:
  1. Nucleolar complex protein 4
IPR036553
Domain description: RNA 3'-terminal phosphate cyclase, insert domain superfamily
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR013791
Domain description: RNA 3'-terminal phosphate cyclase, insert domain
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR020719
Domain description: RNA 3'-terminal phosphate cyclase-like, conserved site
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR013792
Domain description: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR037136
Domain description: RNA 3'-terminal phosphate cyclase domain superfamily
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR000228
Domain description: RNA 3'-terminal phosphate cyclase
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR023797
Domain description: RNA 3'-terminal phosphate cyclase domain
Occurring in:
  1. RNA 3'-terminal phosphate cyclase-like protein
IPR003959
Domain description: ATPase, AAA-type, core
Occurring in:
  1. Ribosome biogenesis protein BMS1
IPR030387
Domain description: Bms1/Tsr1-type G domain
Occurring in:
  1. Ribosome biogenesis protein BMS1
IPR037875
Domain description: Ribosome biogenesis protein Bms1, N-terminal
Occurring in:
  1. Ribosome biogenesis protein BMS1
IPR039761
Domain description: Ribosome biogenesis protein Bms1/Tsr1
Occurring in:
  1. Ribosome biogenesis protein BMS1
IPR024326
Domain description: Ribosomal RNA-processing protein 7, C-terminal domain
Occurring in:
  1. Ribosomal RNA-processing protein 7
IPR040447
Domain description: Rrp7, RRM-like N-terminal domain
Occurring in:
  1. Ribosomal RNA-processing protein 7
IPR040446
Domain description: Ribosomal RNA-processing protein 7
Occurring in:
  1. Ribosomal RNA-processing protein 7
IPR035371
Domain description: Nrap protein, domain 6
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
IPR035370
Domain description: Nrap protein, domain 5
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
IPR035369
Domain description: Nrap protein, domain 4
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
IPR035368
Domain description: Nrap protein, domain 3
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
IPR035367
Domain description: Nrap protein, domain 2
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
IPR035082
Domain description: Nrap protein domain 1
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
IPR005554
Domain description: NOL6/Upt22
Occurring in:
  1. U3 small nucleolar RNA-associated protein 22
IPR048058
Domain description: rRNA biogenesis protein RRP5, S1 domain, eleventh repeat
Occurring in:
  1. rRNA biogenesis protein RRP5
IPR048059
Domain description: rRNA biogenesis protein RRP5, S1 domain, first repeat
Occurring in:
  1. rRNA biogenesis protein RRP5
IPR045209
Domain description: rRNA biogenesis protein Rrp5
Occurring in:
  1. rRNA biogenesis protein RRP5
IPR011082
Domain description: Exosome-associated factor Rrp47/DNA strand repair C1D
Occurring in:
  1. Exosome complex protein LRP1
IPR033100
Domain description: Exosome complex component RRP45
Occurring in:
  1. Exosome complex component RRP45
IPR033770
Domain description: Exosome complex exonuclease RRP44, S1 domain
Occurring in:
  1. Exosome complex exonuclease DIS3
IPR022966
Domain description: Ribonuclease II/R, conserved site
Occurring in:
  1. Exosome complex exonuclease DIS3
IPR041505
Domain description: Dis3-like cold-shock domain 2
Occurring in:
  1. Exosome complex exonuclease DIS3
IPR033771
Domain description: Rrp44-like cold shock domain
Occurring in:
  1. Exosome complex exonuclease DIS3
IPR037319
Domain description: Rrp40, S1 domain
Occurring in:
  1. Exosome complex component RRP40
IPR041054
Domain description: Exosome complex exonuclease Rrp40, N-terminal domain, eukaryotes
Occurring in:
  1. Exosome complex component RRP40
IPR019324
Domain description: M-phase phosphoprotein 6
Occurring in:
  1. M-phase phosphoprotein 6 homolog
IPR011254
Domain description: Prismane-like superfamily
Occurring in:
  1. ATP-dependent RNA helicase DOB1
IPR025696
Domain description: Exosome RNA helicase MTR4-like, beta-barrel domain
Occurring in:
  1. ATP-dependent RNA helicase DOB1
IPR016438
Domain description: ATP-dependent RNA helicase SKI2-like
Occurring in:
  1. ATP-dependent RNA helicase DOB1
IPR019495
Domain description: Exosome complex component CSL4, C-terminal
Occurring in:
  1. Exosome complex component CSL4
IPR039771
Domain description: Exosome complex component Csl4
Occurring in:
  1. Exosome complex component CSL4
IPR007319
Domain description: Small-subunit processome, Utp21
Occurring in:
  1. U3 small nucleolar RNA-associated protein 21
IPR024977
Domain description: Anaphase-promoting complex subunit 4-like, WD40 domain
Occurring in:
  1. U3 small nucleolar RNA-associated protein 21
IPR045161
Domain description: U3 small nucleolar RNA-associated protein 18
Occurring in:
  1. U3 small nucleolar RNA-associated protein 18
IPR013934
Domain description: U3 small nucleolar RNA-associated protein 13, C-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 13
IPR027145
Domain description: Periodic tryptophan protein 2
Occurring in:
  1. Periodic tryptophan protein 2
IPR018983
Domain description: U3 small nucleolar RNA-associated protein 15, C-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 15
IPR021133
Domain description: HEAT, type 2
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
IPR040191
Domain description: U3 small nucleolar RNA-associated protein 10
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
IPR022125
Domain description: U3 small nucleolar RNA-associated protein 10, N-terminal
Occurring in:
  1. U3 small nucleolar RNA-associated protein 10
IPR018843
Domain description: Utp8, beta-propeller
Occurring in:
  1. U3 small nucleolar RNA-associated protein 8
IPR046351
Domain description: U3 small nucleolar RNA-associated protein 4
Occurring in:
  1. U3 small nucleolar RNA-associated protein 4
IPR006984
Domain description: rRNA-processing protein Fcf1/Utp23
Occurring in:
  1. rRNA-processing protein FCF1
IPR037503
Domain description: rRNA-processing protein Fcf1, PIN domain
Occurring in:
  1. rRNA-processing protein FCF1
IPR014810
Domain description: Fcf2 pre-rRNA processing, C-terminal
Occurring in:
  1. rRNA-processing protein FCF2
IPR039883
Domain description: Fcf2/DNTTIP2
Occurring in:
  1. rRNA-processing protein FCF2
IPR007287
Domain description: Sof1-like protein
Occurring in:
  1. Protein SOF1
IPR018972
Domain description: Sas10 C-terminal domain
Occurring in:
  1. Something about silencing protein 10
IPR044281
Domain description: U3 snoRNP protein/Ribosome production factor 1
Occurring in:
  1. U3 small nucleolar ribonucleoprotein protein IMP4
IPR040315
Domain description: WD repeat-containing protein WDR46/Utp7
Occurring in:
  1. U3 small nucleolar RNA-associated protein 7
IPR013268
Domain description: U3 small nucleolar RNA-associated protein 16
Occurring in:
  1. U3 small nucleolar RNA-associated protein 16

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