7ebz

Electron Microscopy
3.09Å resolution

EV-D68 in complex with 2H12 Fab (state S1)

Released:

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Selective cleavage of Tyr-|-Gly bond in picornavirus polyprotein.
NTP + H(2)O = NDP + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero 360-mer (preferred)
PDBe Complex ID:
PDB-CPX-207233 (preferred)
Entry contents:
6 distinct polypeptide molecules
Macromolecules (6 distinct):
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 297 amino acids
Theoretical weight: 32.92 KDa
Source organism: enterovirus D68
UniProt:
  • Canonical: A0A097BW12 (Residues: 565-861; Coverage: 14%)
Sequence domains: Picornavirus coat protein
Capsid protein VP3 Chain: C
Molecule details ›
Chain: C
Length: 247 amino acids
Theoretical weight: 27.11 KDa
Source organism: enterovirus D68
UniProt:
  • Canonical: A0A097BW12 (Residues: 318-564; Coverage: 11%)
Sequence domains: picornavirus capsid protein
Capsid protein VP2 Chain: B
Molecule details ›
Chain: B
Length: 248 amino acids
Theoretical weight: 27.57 KDa
Source organism: enterovirus D68
UniProt:
  • Canonical: A0A097BW12 (Residues: 70-317; Coverage: 11%)
Sequence domains: picornavirus capsid protein
Capsid protein VP4 Chain: D
Molecule details ›
Chain: D
Length: 68 amino acids
Theoretical weight: 7.34 KDa
Source organism: enterovirus D68
UniProt:
  • Canonical: J9Z449 (Residues: 2-69; Coverage: 47%)
Sequence domains: Picornavirus coat protein (VP4)
Fab 2H12 heavy chain Chain: E
Molecule details ›
Chain: E
Length: 216 amino acids
Theoretical weight: 22.99 KDa
Source organism: Mus musculus
Fab 2H12 light chain Chain: F
Molecule details ›
Chain: F
Length: 214 amino acids
Theoretical weight: 23.58 KDa
Source organism: Mus musculus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.09Å
Relevant EMDB volumes: EMD-31055