Structure analysis

CrClpP-S1

Electron Microscopy
3.3Å resolution
Source organism: Chlamydomonas reinhardtii
Assembly composition:
hetero pentadecamer (preferred)
Entry contents: 9 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero pentadecamer
Accessible surface area: 121916.65 Å2
Buried surface area: 48935.99 Å2
Dissociation area: 926.39 Å2
Dissociation energy (ΔGdiss): -0.98 kcal/mol
Dissociation entropy (TΔSdiss): 13.18 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-104292

Macromolecules

Chain: A
Length: 238 amino acids
Theoretical weight: 26.57 KDa
Source organism: Chlamydomonas reinhardtii
UniProt:
  • Canonical: A8INX1 (Residues: 46-283; Coverage: 84%)
Gene name: CHLRE_06g299650v5
Pfam: Clp protease
InterPro:
PDBe-KB: UniProt Coverage View: A8INX1  
123820406080100120140160180200220
 
100200RRNVEARGIRRSPVVTPDIQIGHGEDAIEMDLYRYLLSNRIIFIGGYINDKMATQIVGSLMALEAVDENEDIRIYINSPGGQPYSVLGVVDAMQSIKPDVQTVALGACYSYASLVVAAGTKGKRYAMKNTRLMMTQPMGGSQGDIYQIKATVEELNALYQIFSRYYMKFTGMNQDQIEQATCRDHFMTPEQAKLEGLIDEIIRGKGDYTVPPAIVRQFREVGLVDDLTPGPFLKVDCN
UniProt
A8INX1
Chains
Domains
Secondary structure
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: A8IL21  
123820406080100120140160180200220
 
100200ARRSVAARSSAPELWTPTSEVKLAVSSRNPHPPVVCQGPPPPNPLVIERFQGVVSQLFQQRIVRLGGAVDDDMANLLVAQLLYLDSVDNKRDITMYVNSPGGSVTAGMAVFDTMRHIRPDVSTCCIGLAASMGAFILASGQAGKRYSLPNSRIMIHQPLGGAQGQATDIEIQANEILHHKLTLNGYLAQFTGQSMETITKDTDRDFFMSPQEAIEYGLVDAIISKPQMLQSREVALSS
UniProt
A8IL21
Chains
Domains
Secondary structure
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: A8IJ60  
129620406080100120140160180200220240260280
 
100200NSQPIVAPRTAEMQGDPFGLLLRQRIVFLGGEVEDFGADAIISQLLLLDSQDPTKDIKIFINSPGGSVTAGMGIYDAMMLCRADVNTYCFGLAASMGAFLLGAGKRGKRNSMPNSRIMIHQPLGGASGQAVDIEIQAKEIMYHKANLNRIMADYCQQPLSKIEEDTDRDRYMSPLEAKEYGLIDHIIGGEEAVFNVKGSLKKFPKIKEEFVTDKDDMVKRNIMDGDPFLSETPSWRFKSPQTEPYMPSQAPGSRWFRTRKVSKEDYKEMQEQRQAELMAESDDGKKSVKDRIDDAW
UniProt
A8IJ60
Chains
Domains
Secondary structure
Flexibility predictions
Interaction interfaces
Sequence conservation

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Chains: H, J, M
Length: 208 amino acids
Theoretical weight: 23.11 KDa
Source organism: Chlamydomonas reinhardtii
UniProt:
  • Canonical: P42380 (Residues: 317-524; Coverage: 40%)
Gene name: clpP
Pfam: Clp protease
InterPro:
PDBe-KB: UniProt Coverage View: P42380  
120820406080100120140160180200
 
50100150200NYLDQGALNNESGRSLYRKQTERVIQEEESKKVFMIINSFGGSVGNGITVHDALQFIKAGSLTLALGVAASAASLALAGGTIGERYVTEGCHTMIHQPEGGLNGQASDIWIDSQEIMKIRLDVAEIYSLSTYRPRHKILRDLDRDFYLTAMETIYYGLADEIATNEVMHSIVEMTNQVWSYHDSKQERLLESRASLVGDSTQTQESNS
UniProt
P42380
Chains
Domains
Secondary structure
Interaction interfaces
Sequence conservation

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Chain: I
Length: 246 amino acids
Theoretical weight: 28.14 KDa
Source organism: Chlamydomonas reinhardtii
UniProt:
  • Canonical: A0A2K3CXW8 (Residues: 166-411; Coverage: 60%)
Gene name: CHLRE_14g619100v5
Pfam: Clp protease
InterPro:
PDBe-KB: UniProt Coverage View: A0A2K3CXW8  
124620406080100120140160180200220240
 
100200AYGDYPNYPEGRPLFLPEAERFGNPPDLPSLLLQQRVIYISMPFLPSVTELVVAQCYYLDFDDRNRQRPIYVYLNSTGCINDKGQAISADNEFYAIWAALGFTRAPLYTGVTWKAQNQAAVLLSAGQKGHRYSFPHAKISTAPPVMNRVFGQAVDAQLQANELDYATKYYAAILARSTGKDLETCQKQYLSRKRYFSVKEAYEEGLVDKLVPGFMLNRFRKMQKDAGVGEEDLFDMNKPKFKFRRQ
UniProt
A0A2K3CXW8
Chains
Domains
Secondary structure
Interaction interfaces
Sequence conservation

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Chain: K
Length: 251 amino acids
Theoretical weight: 28.38 KDa
Source organism: Chlamydomonas reinhardtii
UniProt:
  • Canonical: A8IXD6 (Residues: 26-276; Coverage: 91%)
Gene name: CHLRE_03g204350v5
Pfam: Clp protease
InterPro:
PDBe-KB: UniProt Coverage View: A8IXD6  
125120406080100120140160180200220240
 
100200RKLSHLRKKLWKEAGPPPDLATRLFSERIMYLGMPIDSSVAELLTAQLFVLVQEAPDPIFFYINSTGIAKSTTKFGNEHEAIAVYSMMKGVQKYCPIYTLCVGNAFGEAALLLSAGSPGKRAALRSSTIMLRQPLQRLGGMQASDIDIYRKITREKTATMAKYLAACTKKTEEQIMTDFTRPRYFNPYEAVSYGLIDTVLEPKEERAVFKDWEKMGSEIADLGLWDDEEQPLPTNIMYPGTSQYWRSDFDG
UniProt
A8IXD6
Chains
Domains
Secondary structure
Interaction interfaces
Sequence conservation

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Chain: L
Length: 250 amino acids
Theoretical weight: 28.35 KDa
Source organism: Chlamydomonas reinhardtii
UniProt:
  • Canonical: A8IS47 (Residues: 33-282; Coverage: 89%)
Gene name: CHLRE_16g682900v5
Pfam: Clp protease
InterPro:
PDBe-KB: UniProt Coverage View: A8IS47  
125020406080100120140160180200220240
 
100200KKSPQGFWQVTTKQISAAKRSGAPKRKVTTMMPVSVPKVLCRPPGQRQSEWVDLWEAYTYQKVVFIKEAITEDVANNMIALTLYLDSLDQKRIYYWLNVPGGDVVPTLALYDTMQYVRSKTATVCYGLCLGMGGFLLTAGGEKGYRFAMPHSILMMHHPSGASRGQASEMHIESRELVRMRDYLSLLTSNATGQPYDRVIRELSRNKWMDPKQAIEYGMIDKVLTTPMPKMPSTGPSFKFERQNDELIGL
UniProt
A8IS47
Chains
Domains
Secondary structure
Interaction interfaces
Sequence conservation

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Chain: N
Length: 383 amino acids
Theoretical weight: 43.46 KDa
Source organism: Chlamydomonas reinhardtii
UniProt:
  • Canonical: A8IH07 (Residues: 33-415; Coverage: 92%)
Gene name: CHLRE_07g331500v5
Pfam: Clp protease
InterPro:
PDBe-KB: UniProt Coverage View: A8IH07  
138350100150200250300350
 
100200300LVVHARASRYDRRKPPPPDLPSLLFDQRIVYLGMPLVPAVTELMVAELLYLEKQGATLPIEMLINSSGTTRQDGEILSFDSEGVALTSTMGFIKNPISTVNMGLAVGWSCVVLSFGRKGWRKSLPHSLAMIQQPRVPPTGQRQAIEVHIKWREVLDYKRELLRMFSLGTGLPVDKLDADMQRPLYMRPQDALEYGIIDEIIEPNEDKAEKAAQYWIRSGRAESEGRLEQWQEYLSLQEEYALKDSFRKVMTQDLRAAYRDTSSKLLKNSSRNMEQVQEFKERLPDDMLTENDEVRLPFSRDGVKLAILNAECYAERNIARQVAANKVSVPDKWRAAYAARPAPAAPAAEVDYDALIRAVEAMDEKAFATTDLDTLVEQYRVPA
UniProt
A8IH07
Chains
Domains
Secondary structure
Interaction interfaces
Sequence conservation

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Chain: O
Length: 180 amino acids
Theoretical weight: 19.87 KDa
Source organism: Chlamydomonas reinhardtii
UniProt:
  • Canonical: A8J353 (Residues: 65-244; Coverage: 74%)
Gene names: CHLREDRAFT_175283, CHLRE_03g144667v5, CLPT4
InterPro: Clp, N-terminal domain superfamily
PDBe-KB: UniProt Coverage View: A8J353  
118020406080100120140160180
 
50100150ATATAAPSELDDVGVSAAAESIIQYAINFARASETYEVHSWMVLMGILKYETCTAAKILKSLGLEDLYGAWNEVLWALNVCDGLQPRSFVTDIKFADRAFKVITAASDFAVWHGKDKMYSEDVLMALAAGGVLEDLFPDLNLSFERVRKAVEKESGRRYQLPDETEEAGPLKSEDDVSFL
UniProt
A8J353
Chains
Domains
Secondary structure
Flexibility predictions
Interaction interfaces
Sequence conservation

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