› 7jmv

X-ray diffraction
1.57Å resolution

Crystal structure of the pea pathogenicity protein 2 from Madurella mycetomatis complexed with 4-nitrocatechol

Released:
DOI: 10.2210/pdb7jmv/pdb
PDB entry 7jmv coloured by chain, front view.
PDB entry 7jmv coloured by chain, side view.
PDB entry 7jmv coloured by chain, top view.
Source organism: Madurella mycetomatis
Primary publication:
Crystal structures of non-oxidative decarboxylases reveal a new mechanism of action with a catalytic dyad and structural twists.
Zeug M, Markovic N, Iancu CV, Tripp J, Oreb M, Choe JY
OpenAccess logo Sci Rep 11 3056 (2021)
PMID: 33542397

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-495310 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
WW domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 243 amino acids
Theoretical weight: 27.41 KDa
Source organism: Madurella mycetomatis
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A175WC91 (Residues: 1-243; Coverage: 100%)
Gene names: MMYC01_201259, MMYC01_203104
Sequence domains: SnoaL-like domain

Ligands and Environments

3 bound ligands:
Ligand 4NC 1 x 4NC
Ligand K 1 x K
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-D
Spacegroup: P321
Unit cell:
a: 98.74Å b: 98.74Å c: 62.287Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.177 0.177 0.191
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Enzymatic Conversion of CO2: From Natural to Artificial Utilization.
Bierbaumer et al. (2023)
2 other articles

1 mention without citation

Crystal structures of non-oxidative decarboxylases reveal a new mechanism of action with a catalytic dyad and structural twists.
Zeug et al. (2021)