7l7b

Electron Microscopy
3.26Å resolution

Clostridioides difficile RNAP with fidaxomicin

Released:
Source organism: Clostridia bacterium
Related structures: EMD-23210

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-172668 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
DNA-directed RNA polymerase subunit alpha Chains: A, B
Molecule details ›
Chains: A, B
Length: 315 amino acids
Theoretical weight: 34.96 KDa
Source organism: Clostridia bacterium
Expression system: Escherichia coli
UniProt:
  • Canonical: Q18CI5 (Residues: 1-315; Coverage: 100%)
Gene names: CD630_00980, rpoA
Sequence domains:
DNA-directed RNA polymerase subunit beta Chain: C
Molecule details ›
Chain: C
Length: 1266 amino acids
Theoretical weight: 142.37 KDa
Source organism: Clostridia bacterium
Expression system: Escherichia coli
UniProt:
  • Canonical: Q18CF1 (Residues: 2-1238; Coverage: 100%)
Gene names: CD630_00660, rpoB
Sequence domains:
DNA-directed RNA polymerase subunit beta' Chain: D
Molecule details ›
Chain: D
Length: 1161 amino acids
Theoretical weight: 129.92 KDa
Source organism: Clostridia bacterium
Expression system: Escherichia coli
UniProt:
  • Canonical: Q18CF3 (Residues: 1-1161; Coverage: 100%)
Gene names: CD630_00670, rpoC
Sequence domains:
DNA-directed RNA polymerase subunit omega Chain: E
Molecule details ›
Chain: E
Length: 88 amino acids
Theoretical weight: 10.21 KDa
Source organism: Clostridia bacterium
Expression system: Escherichia coli
UniProt:
  • Canonical: Q182S6 (Residues: 1-88; Coverage: 100%)
Gene names: CD2587A, CD630_25871, rpoZ
Sequence domains: RNA polymerase Rpb6
RNA polymerase sigma factor SigA Chain: F
Molecule details ›
Chain: F
Length: 390 amino acids
Theoretical weight: 44.48 KDa
Source organism: Clostridia bacterium
Expression system: Escherichia coli
UniProt:
  • Canonical: Q18BX5 (Residues: 2-390; Coverage: 100%)
Gene names: CD630_14550, sigA, sigA1
Sequence domains:

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.26Å
Relevant EMDB volumes: EMD-23210
Expression system: Escherichia coli