7liv

Electron Microscopy
3.6Å resolution

Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dodecamer (preferred)
PDBe Complex ID:
PDB-CPX-140093 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Major capsid protein Chains: A, C, J
Molecule details ›
Chains: A, C, J
Length: 1370 amino acids
Theoretical weight: 154.05 KDa
Source organism: Human herpesvirus 5 strain AD169
UniProt:
  • Canonical: P16729 (Residues: 1-1370; Coverage: 100%)
Gene names: MCP, UL86
Sequence domains: Herpes virus major capsid protein
Large structural phosphoprotein Chains: 4, 5, 6
Molecule details ›
Chains: 4, 5, 6
Length: 285 amino acids
Theoretical weight: 33.23 KDa
Source organism: Human herpesvirus 5 strain AD169
UniProt:
  • Canonical: P08318 (Residues: 1-285; Coverage: 27%)
Gene name: UL32
Small capsomere-interacting protein Chains: D, E, Z
Molecule details ›
Chains: D, E, Z
Length: 75 amino acids
Theoretical weight: 8.5 KDa
Source organism: Human herpesvirus 5 strain AD169
UniProt:
  • Canonical: Q7M6N6 (Residues: 1-75; Coverage: 100%)
Gene names: SCP, UL48A
Sequence domains: Small capsid protein of Herpesviridae
Triplex capsid protein 1 Chain: p
Molecule details ›
Chain: p
Length: 290 amino acids
Theoretical weight: 33.07 KDa
Source organism: Human herpesvirus 5 strain AD169
UniProt:
  • Canonical: P16783 (Residues: 1-290; Coverage: 100%)
Gene names: TRX1, UL46
Sequence domains: Herpesvirus capsid shell protein VP19C
Triplex capsid protein 2 Chains: q, r
Molecule details ›
Chains: q, r
Length: 306 amino acids
Theoretical weight: 34.64 KDa
Source organism: Human herpesvirus 5 strain AD169
UniProt:
  • Canonical: P16728 (Residues: 1-306; Coverage: 100%)
Gene names: TRX2, UL85
Sequence domains: Herpesvirus VP23 like capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.6Å
Relevant EMDB volumes: EMD-23386