7muv

Electron Microscopy
4.6Å resolution

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 3

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 205-mer (preferred)
PDBe Complex ID:
PDB-CPX-241218 (preferred)
Entry contents:
11 distinct polypeptide molecules
Macromolecules (11 distinct):
IcmE protein Chains: AG, Ag, BG, Bg, CG, Cg, DG, Dg, EG, Eg, FG, Fg, GG, Gg, HG, Hg, IG, Ig, JG, Jg, KG, Kg, LG, Lg, MG, Mg, NG, OG, PG, VG, WG, XG, YG, ZG
Molecule details ›
Chains: AG, Ag, BG, Bg, CG, Cg, DG, Dg, EG, Eg, FG, Fg, GG, Gg, HG, Hg, IG, Ig, JG, Jg, KG, Kg, LG, Lg, MG, Mg, NG, OG, PG, VG, WG, XG, YG, ZG
Length: 1048 amino acids
Theoretical weight: 107.91 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O53087 (Residues: 1-1048; Coverage: 100%)
Gene names: JBJ86_08690, dotG, icmE
Sequence domains:
Type IV secretion protein IcmK Chains: AH, BH, CH, DH, EH, FH, GH, HH, IH, JH, KH, LH, MH, VH, WH, XH, YH, ZH
Molecule details ›
Chains: AH, BH, CH, DH, EH, FH, GH, HH, IH, JH, KH, LH, MH, VH, WH, XH, YH, ZH
Length: 361 amino acids
Theoretical weight: 38.96 KDa
Source organism: Legionella pneumophila
OmpA-like domain-containing protein Chains: AK, BK, CK, DK, EK, FK, GK, HK, IK, JK, KK, LK, MK
Molecule details ›
Chains: AK, BK, CK, DK, EK, FK, GK, HK, IK, JK, KK, LK, MK
Length: 189 amino acids
Theoretical weight: 21.1 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O53086 (Residues: 1-189; Coverage: 100%)
Gene names: DIZ50_13040, ERS253263_00465, JBJ86_08710, JBK99_08030, NCTC12000_00581, O6C86_13655, icmN, lphA, yiaD_1
Sequence domains: OmpA family
OmpA-like domain-containing protein Chains: AL, BL, CL, DL, EL, FL, GL, HL, IL, JL, KL, LL, ML
Molecule details ›
Chains: AL, BL, CL, DL, EL, FL, GL, HL, IL, JL, KL, LL, ML
Length: 249 amino acids
Theoretical weight: 27.58 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: Q5ZXS4 (Residues: 1-249; Coverage: 100%)
Gene name: lpg0657
Sequence domains: OmpA family
Neurogenic locus notch Chains: AN, BN, CN, DN, EN, FN, GN, HN, IN, JN, KN, LN, MN
Molecule details ›
Chains: AN, BN, CN, DN, EN, FN, GN, HN, IN, JN, KN, LN, MN
Length: 124 amino acids
Theoretical weight: 13.6 KDa
Source organism: Legionella pneumophila
Unknown protein fragment Chains: AU, BU, CU, DU, EU, FU, GU, HU, IU, JU, KU, LU, MU
Molecule details ›
Chains: AU, BU, CU, DU, EU, FU, GU, HU, IU, JU, KU, LU, MU
Length: 9 amino acids
Theoretical weight: 784 Da
Source organism: Legionella pneumophila
Unknown protein fragment Chains: AX, BX, CX, DX, EX, FX, GX, HX, IX, JX, KX, LX, MX, VX, WX, XX, YX, ZX
Molecule details ›
Chains: AX, BX, CX, DX, EX, FX, GX, HX, IX, JX, KX, LX, MX, VX, WX, XX, YX, ZX
Length: 48 amino acids
Theoretical weight: 4.1 KDa
Source organism: Legionella pneumophila
Type IVB secretion system lipoprotein DotD Chains: AD, Ad, BD, Bd, CD, Cd, DD, Dd, ED, Ed, FD, Fd, GD, Gd, HD, Hd, ID, Id, JD, Jd, KD, Kd, LD, Ld, MD, Md
Molecule details ›
Chains: AD, Ad, BD, Bd, CD, Cd, DD, Dd, ED, Ed, FD, Fd, GD, Gd, HD, Hd, ID, Id, JD, Jd, KD, Kd, LD, Ld, MD, Md
Length: 163 amino acids
Theoretical weight: 17.86 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O52183 (Residues: 1-163; Coverage: 100%)
Gene names: DIZ50_08440, JBJ86_00860, JBK99_04205, dotD
Sequence domains: DotD protein
IcmG protein Chains: AF, Af, BF, Bf, CF, Cf, DF, Df, EF, Ef, FF, Ff, GF, Gf, HF, Hf, IF, If, JF, Jf, KF, Kf, LF, Lf, MF, Mf, VF, WF, XF, YF, ZF
Molecule details ›
Chains: AF, Af, BF, Bf, CF, Cf, DF, Df, EF, Ef, FF, Ff, GF, Gf, HF, Hf, IF, If, JF, Jf, KF, Kf, LF, Lf, MF, Mf, VF, WF, XF, YF, ZF
Length: 269 amino acids
Theoretical weight: 29.73 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O54615 (Residues: 1-269; Coverage: 100%)
Gene names: JBJ86_08685, dotF, icmG
Type IV secretion system DotC family protein Chains: AC, BC, CC, DC, EC, FC, GC, HC, IC, JC, KC, LC, MC
Molecule details ›
Chains: AC, BC, CC, DC, EC, FC, GC, HC, IC, JC, KC, LC, MC
Length: 303 amino acids
Theoretical weight: 34.16 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O52184 (Residues: 1-303; Coverage: 100%)
Gene names: C3928_14230, F7Z80_08005, F9V49_09090, I8572_002175, I8Y58_002455, I8Z60_002260, JBJ86_00865, KLD42_000197, dotC
Sequence domains: Type IV secretory system, conjugal DNA-protein transfer
DUF2807 domain-containing protein Chains: AM, BM, CM, DM, EM, FM, GM, HM, IM, JM, KM, LM, MM
Molecule details ›
Chains: AM, BM, CM, DM, EM, FM, GM, HM, IM, JM, KM, LM, MM
Length: 320 amino acids
Theoretical weight: 36.1 KDa
Source organism: Legionella pneumophila

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.6Å
Relevant EMDB volumes: EMD-24023