7n1h

Electron Microscopy
4.3Å resolution

CryoEM structure of Venezuelan equine encephalitis virus VLP in complex with the LDLRAD3 receptor

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 960-mer (preferred)
PDBe Complex ID:
PDB-CPX-101064 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Low-density lipoprotein receptor class A domain-containing protein 3 Chains: M, N, O, P
Molecule details ›
Chains: M, N, O, P
Length: 39 amino acids
Theoretical weight: 4.31 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
UniProt:
  • Canonical: A2AR95 (Residues: 28-66; Coverage: 12%)
Gene name: Ldlrad3
Sequence domains: Low-density lipoprotein receptor domain class A
p130 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 442 amino acids
Theoretical weight: 47.95 KDa
Source organism: Venezuelan equine encephalitis virus
Expression system: Homo sapiens
UniProt:
  • Canonical: A0A0C4MX98 (Residues: 814-1255; Coverage: 35%)
Sequence domains: Alphavirus E1 glycoprotein
p130 Chains: E, F, G, H
Molecule details ›
Chains: E, F, G, H
Length: 423 amino acids
Theoretical weight: 47.11 KDa
Source organism: Venezuelan equine encephalitis virus
Expression system: Homo sapiens
UniProt:
  • Canonical: A0A0C4MX98 (Residues: 335-757; Coverage: 34%)
Sequence domains: Alphavirus E2 glycoprotein
p130 Chains: I, J, K, L
Molecule details ›
Chains: I, J, K, L
Length: 162 amino acids
Theoretical weight: 18.2 KDa
Source organism: Venezuelan equine encephalitis virus
Expression system: Homo sapiens
UniProt:
  • Canonical: A0A0C4MX98 (Residues: 114-275; Coverage: 13%)
Sequence domains: Alphavirus core protein

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.3Å
Relevant EMDB volumes: EMD-24116
Expression system: Homo sapiens