7nhn

Electron Microscopy
2.9Å resolution

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 52-mer (preferred)
PDBe Complex ID:
PDB-CPX-249742 (preferred)
Entry contents:
47 distinct polypeptide molecules
5 distinct RNA molecules
Macromolecules (52 distinct):
ABC transporter domain-containing protein Chain: 0
Molecule details ›
Chain: 0
Length: 567 amino acids
Theoretical weight: 64.28 KDa
Source organism: Listeria monocytogenes EGD-e
Expression system: Listeria monocytogenes EGD-e
UniProt:
  • Canonical: Q8Y8I3 (Residues: 1-523; Coverage: 100%)
Gene name: lmo0919
Sequence domains:
Large ribosomal subunit protein uL2 Chain: G
Molecule details ›
Chain: G
Length: 277 amino acids
Theoretical weight: 30.57 KDa
Source organism: Listeria monocytogenes EGD-e
UniProt:
  • Canonical: P60426 (Residues: 1-277; Coverage: 100%)
Gene names: lmo2629, rplB
Sequence domains:
Large ribosomal subunit protein uL3 Chain: H
Large ribosomal subunit protein uL4 Chain: I
Large ribosomal subunit protein uL5 Chain: J
Large ribosomal subunit protein uL6 Chain: K
Large ribosomal subunit protein uL13 Chain: M
Large ribosomal subunit protein uL14 Chain: N
Large ribosomal subunit protein uL15 Chain: O
Large ribosomal subunit protein uL16 Chain: P
Large ribosomal subunit protein bL17 Chain: Q
Large ribosomal subunit protein uL18 Chain: R
Large ribosomal subunit protein bL19 Chain: S
Large ribosomal subunit protein bL20 Chain: T
Large ribosomal subunit protein bL21 Chain: U
Large ribosomal subunit protein uL22 Chain: V
Large ribosomal subunit protein uL23 Chain: W
Large ribosomal subunit protein uL24 Chain: X
Large ribosomal subunit protein bL27 Chain: Z
Large ribosomal subunit protein bL28 Chain: 1
Large ribosomal subunit protein uL29 Chain: 2
Large ribosomal subunit protein uL30 Chain: 3
Large ribosomal subunit protein bL32B Chain: 5
Large ribosomal subunit protein bL33A Chain: 6
Large ribosomal subunit protein bL34 Chain: 7
Large ribosomal subunit protein bL35 Chain: 8
Large ribosomal subunit protein bL36 Chain: 9
Small ribosomal subunit protein uS2 Chain: c
Small ribosomal subunit protein uS3 Chain: d
Small ribosomal subunit protein uS4 Chain: e
Small ribosomal subunit protein uS5 Chain: f
Small ribosomal subunit protein bS6 Chain: g
Small ribosomal subunit protein uS7 Chain: h
Small ribosomal subunit protein uS8 Chain: i
Small ribosomal subunit protein uS9 Chain: j
Small ribosomal subunit protein uS10 Chain: k
Small ribosomal subunit protein uS11 Chain: l
Small ribosomal subunit protein uS12 Chain: m
Small ribosomal subunit protein uS13 Chain: n
Small ribosomal subunit protein uS14B Chain: o
Small ribosomal subunit protein uS15 Chain: p
Small ribosomal subunit protein bS16 Chain: q
Small ribosomal subunit protein uS17 Chain: r
Small ribosomal subunit protein bS18 Chain: s
Small ribosomal subunit protein uS19 Chain: t
Small ribosomal subunit protein bS20 Chain: u
Large ribosomal subunit protein bL31B Chain: 4
tRNA-fMet Chain: D
RNA (5'-R(P*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3') Chain: b
23S ribosomal RNA Chain: A
16S ribosomal RNA Chain: a
5S ribosomal RNA Chain: B

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-12334
Expression system: Listeria monocytogenes EGD-e