7ns4

Electron Microscopy
3.9Å resolution

Catalytic module of yeast Chelator-GID SR4 E3 ubiquitin ligase

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-154129 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
E3 ubiquitin-protein ligase RMD5 Chain: b
Molecule details ›
Chain: b
Length: 421 amino acids
Theoretical weight: 49.24 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q12508 (Residues: 1-421; Coverage: 100%)
Gene names: GID2, RMD5, YD9320A.05c, YDR255C
Sequence domains: CTLH/CRA C-terminal to LisH motif domain
Protein FYV10 Chain: i
Molecule details ›
Chain: i
Length: 516 amino acids
Theoretical weight: 59.98 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P40492 (Residues: 1-516; Coverage: 100%)
Gene names: FYV10, GID9, YIL097W
Sequence domains: CTLH/CRA C-terminal to LisH motif domain

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.9Å
Relevant EMDB volumes: EMD-12560
Expression system: Trichoplusia ni