› 7nx9

X-ray diffraction
2.4Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-279652 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
EY6A Fab heavy chain Chain: H
Molecule details ›
Chain: H
Length: 226 amino acids
Theoretical weight: 24.35 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
EY6A Fab light chain Chain: L
Molecule details ›
Chain: L
Length: 215 amino acids
Theoretical weight: 23.32 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Spike protein S1 Chain: E
COVOX-222 Fab heavy chain Chain: A
COVOX-222 Fab light chain Chain: B

Ligands and Environments

5 bound ligands:
Ligand SO4 10 x SO4
Ligand GOL 3 x GOL
Ligand NAG 1 x NAG
Ligand PEG 1 x PEG
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 54.302Å b: 120.881Å c: 210.167Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.201 0.2 0.228
Expression system: Homo sapiens

Quick links

Citations

103 review citations

The biological and clinical significance of emerging SARS-CoV-2 variants.
Tao et al. (2021)
102 more

5 mentions without citation

Antibody evasion by the P.1 strain of SARS-CoV-2.
Dejnirattisai et al. (2021)
4 more

PDB-REDO

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PDB-REDO