› 7ojg

Electron Microscopy
3.4Å resolution

CRYO-EM STRUCTURE OF UNDECAMERIC SLYB FROM ESCHERICHIA COLI K12

Released:
DOI: 10.2210/pdb7ojg/pdb
PDB entry 7ojg coloured by chain, front view.
PDB entry 7ojg coloured by chain, side view.
PDB entry 7ojg coloured by chain, top view.
Source organism: Escherichia coli BW25113
Primary publication:
SlyB encapsulates outer membrane proteins in stress-induced lipid nanodomains
Janssens A, Nguyen VS, Cecil AJ, Van der Verren SE, Timmerman E, Deghelt M, Pak AJ, Collet JF, Impens F, Remaut H
Nature (2023)
Related structures: EMD-12950

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo undecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112338 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycine zipper 2TM domain-containing protein Chains: A, B, C, D, E, F, G, H, I, J, K
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K
Length: 155 amino acids
Theoretical weight: 15.61 KDa
Source organism: Escherichia coli BW25113
Expression system: Escherichia coli
UniProt:
  • Canonical: D2AGE2 (Residues: 1-155; Coverage: 100%)
Gene names: SFxv_1871, slyB
Sequence domains: Glycine zipper 2TM domain

Ligands and Environments

4 bound ligands:
Ligand PLM 33 x PLM
Ligand GOL 11 x GOL
Ligand L8Z 11 x L8Z
Ligand LPP 11 x LPP
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.4Å
Relevant EMDB volumes: EMD-12950
Expression system: Escherichia coli

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