Structure analysis

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Electron Microscopy
2.9Å resolution
Source organism: Enterococcus faecalis V583
Assembly composition:
hetero 53-mer (preferred)
Entry contents: 48 distinct polypeptide molecules
5 distinct RNA molecules

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Multimeric state: hetero 53-mer
Accessible surface area: 759912.75 Å2
Buried surface area: 315776.0 Å2
Dissociation area: 1,180.66 Å2
Dissociation energy (ΔGdiss): 15.71 kcal/mol
Dissociation entropy (TΔSdiss): 12.37 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-157827

Macromolecules

158650100150200250300350400450500550
 
200400
Chains
Chain A (auth 0)
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation

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Chain: 1
Length: 62 amino acids
Theoretical weight: 7.34 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839F6 (Residues: 1-62; Coverage: 100%)
Gene names: EF_0214, rpmC
Pfam: Ribosomal L29 protein
InterPro:
PDBe-KB: UniProt Coverage View: Q839F6  
16251015202530354045505560
 
204060MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQAN
UniProt
Q839F6
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839E6  
159510152025303540455055
 
204060MAELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV
UniProt
Q839E6
Chains
Domains
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q836E3  
1891020304050607080
 
20406080
UniProt
Q836E3
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: 4
Length: 59 amino acids
Theoretical weight: 6.5 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q836R0 (Residues: 1-59; Coverage: 100%)
Gene names: EF_1048, rpmF-3, rpmF3
Pfam: Ribosomal L32p protein family
InterPro:
PDBe-KB: UniProt Coverage View: Q836R0  
159510152025303540455055
 
204060MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDV*SKEA
UniProt
Q836R0
Chains
Domains
Ligand binding sites
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Chain: 5
Length: 48 amino acids
Theoretical weight: 5.92 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: P59628 (Residues: 1-48; Coverage: 98%)
Gene names: EF_2856, rpmG-3, rpmG3
Pfam: Ribosomal protein L33
InterPro:
PDBe-KB: UniProt Coverage View: P59628  
14851015202530354045
 
2040MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRET
UniProt
P59628
Chains
Domains
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Chain: 6
Length: 44 amino acids
Theoretical weight: 5.37 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q82YU9 (Residues: 1-44; Coverage: 100%)
Gene names: EF_3333, rpmH
Pfam: Ribosomal protein L34
InterPro:
PDBe-KB: UniProt Coverage View: Q82YU9  
144510152025303540
 
2040MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA
UniProt
Q82YU9
Chains
Domains
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Ligand binding sites
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Sequence conservation

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Chain: 7
Length: 65 amino acids
Theoretical weight: 7.6 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q837C8 (Residues: 1-65; Coverage: 99%)
Gene names: EF_0915, rpmI
Pfam: Ribosomal protein L35
InterPro:
PDBe-KB: UniProt Coverage View: Q837C8  
1655101520253035404550556065
 
204060MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQQLARM
UniProt
Q837C8
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation

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Chain: 8
Length: 38 amino acids
Theoretical weight: 4.44 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839E1 (Residues: 1-38; Coverage: 100%)
Gene names: EF_0230, rpmJ
Pfam: Ribosomal protein L36
InterPro:
PDBe-KB: UniProt Coverage View: Q839E1  
1385101520253035
 
102030MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG
UniProt
Q839E1
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q830Q6  
122920406080100120140160180200220
 
100200
UniProt
Q830Q6
Chains
Domains
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839G1  
127620406080100120140160180200220240260
 
100200
UniProt
Q839G1
Chains
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Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839G4  
120920406080100120140160180200
 
50100150200
UniProt
Q839G4
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation

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Chain: I
Length: 207 amino acids
Theoretical weight: 22.55 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839G3 (Residues: 1-207; Coverage: 100%)
Gene names: EF_0207, rplD
Pfam: Ribosomal protein L4/L1 family
InterPro:
PDBe-KB: UniProt Coverage View: Q839G3  
120720406080100120140160180200
 
50100150200
UniProt
Q839G3
Chains
Domains
Flexibility predictions
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Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839F2  
117920406080100120140160
 
50100150
UniProt
Q839F2
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839E9  
117820406080100120140160
 
50100150
UniProt
Q839E9
Chains
Domains
Interaction interfaces
Sequence conservation

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114720406080100120140
 
50100
Chains
Chain S (auth M)
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839F4  
1122102030405060708090100110120
 
50100
UniProt
Q839F4
Chains
Domains
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Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839E5  
114620406080100120140
 
50100
UniProt
Q839E5
Chains
Domains
Flexibility predictions
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Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839F7  
114420406080100120140
 
50100
UniProt
Q839F7
Chains
Domains
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Sequence conservation

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Chain: Q
Length: 127 amino acids
Theoretical weight: 14.5 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839D8 (Residues: 1-127; Coverage: 100%)
Gene names: EF_0234, rplQ
Pfam: Ribosomal protein L17
InterPro:
PDBe-KB: UniProt Coverage View: Q839D8  
1127102030405060708090100110120
 
50100
UniProt
Q839D8
Chains
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Ligand binding sites
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Chain: R
Length: 118 amino acids
Theoretical weight: 12.94 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839E8 (Residues: 1-118; Coverage: 100%)
Gene names: EF_0223, rplR
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
PDBe-KB: UniProt Coverage View: Q839E8  
1118102030405060708090100110
 
50100
UniProt
Q839E8
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: S
Length: 115 amino acids
Theoretical weight: 13.24 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q833P5 (Residues: 1-115; Coverage: 100%)
Gene names: EF_1898, rplS
Pfam: Ribosomal protein L19
InterPro:
PDBe-KB: UniProt Coverage View: Q833P5  
1115102030405060708090100110
 
50100
UniProt
Q833P5
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: T
Length: 119 amino acids
Theoretical weight: 13.67 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q837C7 (Residues: 1-119; Coverage: 100%)
Gene names: EF_0916, rplT
Pfam: Ribosomal protein L20
InterPro:
PDBe-KB: UniProt Coverage View: Q837C7  
1119102030405060708090100110
 
50100
UniProt
Q837C7
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: U
Length: 102 amino acids
Theoretical weight: 11.17 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q836X6 (Residues: 1-102; Coverage: 100%)
Gene names: EF_0968, rplU
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
PDBe-KB: UniProt Coverage View: Q836X6  
1102102030405060708090100
 
50100
UniProt
Q836X6
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839F9  
1115102030405060708090100110
 
50100
UniProt
Q839F9
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839G2  
196102030405060708090
 
50
UniProt
Q839G2
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839F3  
1103102030405060708090100
 
50100
UniProt
Q839F3
Chains
Domains
Ligand binding sites
Sequence conservation

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Chain: Y
Length: 95 amino acids
Theoretical weight: 10.18 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q836X4 (Residues: 1-95; Coverage: 100%)
Gene names: EF_0970, rpmA
Pfam: Ribosomal L27 protein
InterPro:
PDBe-KB: UniProt Coverage View: Q836X4  
195102030405060708090
 
50
UniProt
Q836X4
Chains
Domains
Flexibility predictions
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q82ZE4  
16251015202530354045505560
 
204060MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIERV
UniProt
Q82ZE4
Chains
Domains
Flexibility predictions
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q831U9  
126120406080100120140160180200220240260
 
100200
UniProt
Q831U9
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839F8  
121820406080100120140160180200
 
100200
UniProt
Q839F8
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q82ZI6  
120320406080100120140160180200
 
50100150200
UniProt
Q82ZI6
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839E7  
116620406080100120140160
 
50100150
UniProt
Q839E7
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839Z0  
199102030405060708090
 
50100
UniProt
Q839Z0
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839H0  
115620406080100120140
 
50100150
UniProt
Q839H0
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: i
Length: 132 amino acids
Theoretical weight: 14.94 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839F0 (Residues: 1-132; Coverage: 100%)
Gene names: EF_0220, rpsH
Pfam: Ribosomal protein S8
InterPro:
PDBe-KB: UniProt Coverage View: Q839F0  
1132102030405060708090100110120130
 
50100
UniProt
Q839F0
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q82Z47  
1130102030405060708090100110120130
 
50100
UniProt
Q82Z47
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839G5  
1102102030405060708090100
 
50100
UniProt
Q839G5
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839E0  
1129102030405060708090100110120
 
50100
UniProt
Q839E0
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: m
Length: 137 amino acids
Theoretical weight: 15.31 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839H1 (Residues: 1-137; Coverage: 100%)
Gene names: EF_0198, rpsL
Pfam: Ribosomal protein S12/S23
InterPro:
PDBe-KB: UniProt Coverage View: Q839H1  
1137102030405060708090100110120130
 
50100
UniProt
Q839H1
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: P59754  
1121102030405060708090100110120
 
50100
UniProt
P59754
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839F1  
16151015202530354045505560
 
204060MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKASW
UniProt
Q839F1
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation

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Chain: p
Length: 89 amino acids
Theoretical weight: 10.67 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q82ZJ1 (Residues: 1-89; Coverage: 100%)
Gene names: EF_3065, rpsO
Pfam: Ribosomal protein S15
InterPro:
PDBe-KB: UniProt Coverage View: Q82ZJ1  
1891020304050607080
 
20406080
UniProt
Q82ZJ1
Chains
Domains
Flexibility predictions
Sequence conservation

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Chain: q
Length: 91 amino acids
Theoretical weight: 10.36 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q834F9 (Residues: 1-91; Coverage: 100%)
Gene names: EF_1694, rpsP
Pfam: Ribosomal protein S16
InterPro:
PDBe-KB: UniProt Coverage View: Q834F9  
191102030405060708090
 
20406080
UniProt
Q834F9
Chains
Domains
Ligand binding sites
Sequence conservation

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Chain: r
Length: 88 amino acids
Theoretical weight: 10.33 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839F5 (Residues: 1-88; Coverage: 100%)
Gene names: EF_0215, rpsQ
Pfam: Ribosomal protein S17
InterPro:
PDBe-KB: UniProt Coverage View: Q839F5  
1881020304050607080
 
20406080MTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDENNTAKVGDIVKIMETRPLSATKRFRLLEVVEEAVII
UniProt
Q839F5
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: s
Length: 79 amino acids
Theoretical weight: 9.26 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q839Y8 (Residues: 1-79; Coverage: 100%)
Gene names: EF_0009, rpsR
Pfam: Ribosomal protein S18
InterPro:
PDBe-KB: UniProt Coverage View: Q839Y8  
17910203040506070
 
20406080MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLTIAIKRARIMGLLPFVSDEQ
UniProt
Q839Y8
Chains
Domains
Interaction interfaces
Sequence conservation

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PDBe-KB: UniProt Coverage View: Q839G0  
192102030405060708090
 
20406080
UniProt
Q839G0
Chains
Domains
Interaction interfaces
Sequence conservation

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Chain: u
Length: 83 amino acids
Theoretical weight: 8.97 KDa
Source organism: Enterococcus faecalis V583
UniProt:
  • Canonical: Q831Q7 (Residues: 1-83; Coverage: 100%)
Gene names: EF_2443, rpsT
Pfam: Ribosomal protein S20
InterPro:
PDBe-KB: UniProt Coverage View: Q831Q7  
1831020304050607080
 
20406080MPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAVAAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSKLAK
UniProt
Q831Q7
Chains
Domains
Ligand binding sites
Sequence conservation

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Name: 23S ribosomal RNA
Representative chains: A
Length: 2912 nucleotides
Theoretical weight: 944 KDa
Rfam: Bacterial large subunit ribosomal RNA
129122004006008001,0001,2001,4001,6001,8002,0002,2002,4002,6002,800
 
10002000
Chains
Chain J (auth A)
Rfam
Ligand binding sites
Interaction interfaces

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Name: 5S ribosomal RNA
Representative chains: B
Length: 115 nucleotides
Theoretical weight: 37.13 KDa
Rfam: 5S ribosomal RNA
1115102030405060708090100110
 
50100
Chains
Chain K (auth B)
Rfam
Ligand binding sites
Interaction interfaces

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Name: tRNA-fMet
Representative chains: D
Length: 77 nucleotides
Theoretical weight: 24.81 KDa
Rfam: tRNA
17710203040506070
 
204060CGCGGGGUGGAGCAGUCAGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUAGGUUCAAAUCCUGCCCCCGCAACCA
Chains
Chain L (auth D)
Rfam
Interaction interfaces

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Name: 16S ribosomal RNA
Representative chains: a
Length: 1558 nucleotides
Theoretical weight: 504.22 KDa
Rfam: Bacterial small subunit ribosomal RNA
115582004006008001,0001,2001,400
 
50010001500
Chains
Chain GA (auth a)
Rfam
Ligand binding sites
Interaction interfaces

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Name: Messenger RNA
Representative chains: b
Length: 19 nucleotides
Theoretical weight: 6.22 KDa
11924681012141618
 
5101520GGAGGUAAAAAAAUGACAA
Chains
Chain HA (auth b)

Search similar RNA