7pe8

Electron Microscopy
3.2Å resolution

cryo-EM structure of DEPTOR bound to human mTOR complex 2, focussed on one protomer

Released:
Source organism: Homo sapiens
Related structures: EMD-13348

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-154623 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Serine/threonine-protein kinase mTOR Chain: A
Molecule details ›
Chain: A
Length: 2571 amino acids
Theoretical weight: 291.32 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P42345 (Residues: 1-258, 259-2549; Coverage: 100%)
Gene names: FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1
Sequence domains:
Target of rapamycin complex subunit LST8 Chain: C
Molecule details ›
Chain: C
Length: 326 amino acids
Theoretical weight: 35.91 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9BVC4 (Residues: 1-326; Coverage: 100%)
Gene names: GBL, LST8, MLST8
Sequence domains: WD domain, G-beta repeat
Rapamycin-insensitive companion of mTOR Chain: E
Molecule details ›
Chain: E
Length: 1708 amino acids
Theoretical weight: 192.47 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q6R327 (Residues: 1-1708; Coverage: 100%)
Gene names: KIAA1999, RICTOR
Sequence domains:
Target of rapamycin complex 2 subunit MAPKAP1 Chain: G
Molecule details ›
Chain: G
Length: 522 amino acids
Theoretical weight: 59.21 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9BPZ7 (Residues: 1-522; Coverage: 100%)
Gene names: MAPKAP1, MIP1, SIN1
Sequence domains:
DEP domain-containing mTOR-interacting protein Chain: I
Molecule details ›
Chain: I
Length: 409 amino acids
Theoretical weight: 46.37 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q8TB45 (Residues: 1-409; Coverage: 100%)
Gene names: DEPDC6, DEPTOR
Sequence domains: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.2Å
Relevant EMDB volumes: EMD-13348
Expression system: Spodoptera frugiperda