› › Structure analysis

Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Tfb1m

Electron Microscopy
3.19Å resolution
PDB entry 7pnt coloured by chain, front view.
PDB entry 7pnt coloured by chain, side view.
PDB entry 7pnt coloured by chain, top view.
Source organism: Mus musculus
Assembly composition:
hetero 32-mer (preferred)
Entry contents: 31 distinct polypeptide molecules
1 distinct RNA molecule

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 32-mer
Accessible surface area: 370675.24 Å2
Buried surface area: 202473.95 Å2
Dissociation area: 4,131.06 Å2
Dissociation energy (ΔGdiss): 21.51 kcal/mol
Dissociation entropy (TΔSdiss): 14.62 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-287126

Macromolecules

Small ribosomal subunit protein uS2m
Chain: B
Length: 291 amino acids
Theoretical weight: 32.36 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q924T2 (Residues: 1-291; Coverage: 100%)
Gene name: Mrps2
Pfam: Ribosomal protein S2
InterPro:
Small ribosomal subunit protein uS2m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS2m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS2m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q924T2  
129120406080100120140160180200220240260280
 
100200MAPAPAVLTRLLCAGVRRWPGFLQKAIPGPAEQNGRKVTGAPVPAVSEPQDGDDFQSRILDTPLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKRRQMEALHRLQSPKGSEGSGTSPVPDKSHSP
UniProt
Q924T2
Chains
Domains
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Small ribosomal subunit protein uS3m
Chain: C
Length: 167 amino acids
Theoretical weight: 18.93 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CQV5 (Residues: 1-167; Coverage: 100%)
Gene name: Mrps24
Pfam: Mitochondrial ribosome subunit S24
InterPro: Small ribosomal subunit protein uS3m, metazoan
Small ribosomal subunit protein uS3m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS3m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS3m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9CQV5  
116720406080100120140160
 
50100150MAWSASVRGLGQRVLACSRELPGAWRTLHTSAVCAKNRAARVRVAKGNKPVSYEEAHAPHYIAHRKGWLSLHTGNLDGEDHAAERTLEDVFLRKFMMGTFPGCLADQIVLKRRANQVDICALVLRQLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSKVVYKYI
UniProt
Q9CQV5
Chains
Domains
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein uS5m
Chain: D
Length: 432 amino acids
Theoretical weight: 48.29 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q99N87 (Residues: 1-432; Coverage: 100%)
Gene name: Mrps5
Pfam:
InterPro:
Small ribosomal subunit protein uS5m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS5m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS5m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q99N87  
143250100150200250300350400
 
200400MAAAVRAAGCLPALCSLQAGHFLSRQLSLNAFPVAATSFLAVKTALSHGSLSSRETRRNHCLTSLSHVLQTQCCVSSPGNWTGQQCRPYSFFTKLTAEELWKGALAETGAGARKGRGKRTKKKKRKDLNRGQIIGEGRSGFLWPGLNVPLIKSGVVQNIGQRSKEEQQKVEATMVEQREEWDRKRKIKVKRERGWSGNTWGGVSIGPPDPGPNGETYEDFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGNGAAGFAIGKAADRGDAFRKAKNRAIHYLHYIERYEGHTIFHDISLRFKRTQIRMKKQPRGYGLRCHRAIITICRLIGIKDMYARVTGSMNMLNLTRGLFHGLARQETHQHLADKKGLHVVEFREECGPLPIVVASPHGALSKEPEPEPEVPDTKLDWQDVKAMQGLKRSVWFNLKRPAT
UniProt
Q99N87
Chains
Domains
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Small ribosomal subunit protein bS6m
Chain: E
Length: 125 amino acids
Theoretical weight: 14.33 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P58064 (Residues: 1-125; Coverage: 100%)
Gene names: Mrps6, Rpms6
Pfam: Ribosomal protein S6
InterPro:
Small ribosomal subunit protein bS6m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein bS6m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein bS6m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P58064  
1125102030405060708090100110120
 
50100MPRYELALILKAMRRPETAAALKRTIESLMDRGAIVRNLESLGERALPYRISSHSQQHSRGGYFLVDFYAPTSAVENILEHLARDIDVVRPNIVKHPLTQEVKECDGIVPVPLEEKLYSTKRRKK
UniProt
P58064
Chains
Domains
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Small ribosomal subunit protein uS7m
Chain: F
Length: 242 amino acids
Theoretical weight: 28.11 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q80X85 (Residues: 1-242; Coverage: 100%)
Gene name: Mrps7
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS7m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS7m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q80X85  
124220406080100120140160180200220240
 
100200MAAPALRAPLRWSGLALGVRCAVWNLPGLTQVRGSRYAPEFREPLIDKEYYRKPVAELTEEEKYDQELKKTQFIKAAAATETSSVFADPVISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKYRAASAEEQATIERNPYRIFHEALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITECRENKPRRTLMPEKLSHELLEAFHNRGPVIKRKHNMHKMAEANRALAHYRWW
UniProt
Q80X85
Chains
Domains
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein uS9m
Chain: G
Length: 390 amino acids
Theoretical weight: 45 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D7N3 (Residues: 1-390; Coverage: 100%)
Gene name: Mrps9
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS9m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS9m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9D7N3  
139050100150200250300350
 
100200300MAAPCVSCGRVLSLWFTPAVRASLCQRPGYWTASAVGWQTGTRFQLSKLIHTTVVTTKKNVQASRQESYTEDFIKKQIEEFNIGKRHLANMMGEDPETFAEEDIDRAIAYLFPSGLFEKRARPMMKHPEHIFPKQRATQWGEDGRPFHFLFYTGKQSYYSLMHDVYGKVMQLEKHRGPLSASAESRDLIGSRWLIKEELEEMLVEKLSDEDYAQFIRLLEKLLTLPCGPAEEEFVQRFRRSVTIQSKKQLIEPVQYDEQGMAFSTSEGRRKSATAQAVVYEHGSGKIHVNGVDYLIYFPITQDREQLMFPFHFLDRLERHDVTCTVSGGGRSAQAGAIRLAMARALCSFVTEDEVEWMRQAGLLTPDPRIRERKKPGQEGARRKFTWKKR
UniProt
Q9D7N3
Chains
Domains
Flexibility predictions
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Sequence conservation
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Small ribosomal subunit protein uS10m
Chain: H
Length: 160 amino acids
Theoretical weight: 18.73 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q80ZK0 (Residues: 1-160; Coverage: 100%)
Gene name: Mrps10
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS10m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS10m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q80ZK0  
116020406080100120140160
 
50100150MKWVPLSNLHVDVPKDVTRPTITTSDEPDTLYKRLSILVKAHDRAVLDSYEYFAVLAAKELGISIKVHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVYLEYIQRNLPEGVAMEVTKTQIQQLPEHIKEPMWETVPEEKKESKS
UniProt
Q80ZK0
Chains
Domains
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Sequence conservation
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Small ribosomal subunit protein uS11m
Chain: I
Length: 191 amino acids
Theoretical weight: 20.25 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9DCA2 (Residues: 1-191; Coverage: 100%)
Gene name: Mrps11
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS11m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS11m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9DCA2  
119120406080100120140160180
 
50100150MQVLRNSGSWLLLSWAGHGMTRFVGIAPAKNIHTGAPRLEDSAARQNTEREAAPSRFSLYPPVPGQESSLQWAGMKFEDVPIAHIKATYNNTQIQVVSATNASLARASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHIRVVVKGMGPGRWSAIKGLTMGGLEVISITDNTPVPH*GCRPRKARRL
UniProt
Q9DCA2
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
Molecule details ›

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Small ribosomal subunit protein uS12m
Chain: J
Length: 139 amino acids
Theoretical weight: 15.47 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: O35680 (Residues: 1-139; Coverage: 100%)
Gene names: Mrps12, Rpms12
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS12m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS12m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: O35680  
1139102030405060708090100110120130
 
50100MSWPGLLYGLTTSLSRGLALAPQLWAARSMATLNQMHRLGPRKEPPKRLGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVRGKYDCGHVQKKK
UniProt
O35680
Chains
Domains
Interaction interfaces
Sequence conservation
Molecule details ›

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Small ribosomal subunit protein uS14m
Chain: K
Length: 128 amino acids
Theoretical weight: 14.95 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CR88 (Residues: 1-128; Coverage: 100%)
Gene name: Mrps14
Pfam: Ribosomal protein S14p/S29e
InterPro: Small ribosomal subunit protein uS14
Small ribosomal subunit protein uS14m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS14m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS14m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9CR88  
1128102030405060708090100110120
 
50100MAASVLGSLLRTFRQAVPPSASGQVRGYYVDWRMLRDLKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW
UniProt
Q9CR88
Chains
Domains
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein uS15m
Chain: L
Length: 258 amino acids
Theoretical weight: 29.52 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9DC71 (Residues: 1-258; Coverage: 100%)
Gene names: Mrps15, Rpms15
Pfam: Ribosomal protein S15
InterPro:
Small ribosomal subunit protein uS15m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS15m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS15m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9DC71  
125820406080100120140160180200220240
 
100200MLRAAWRALSSVRAQAVTRAPVPALRGGSSASLLSARCGLQPPSLLRAARAYAAVQKPVQPKQDDEPPSSAFIKEYKDIIPNIEKVDDVVKRILSLEMASRKEKLKIKQEQLMNKIVENPEDSRTLEAQIIALTVRIRNYEEHMQKHRKDKAHKRHLLMSIDRRKKLLKILRQTNYDVFEKTCKELGVEYTLPPLHFQKVHRRFLAKKALCIRVYQEVQKLKKQKRALKAAAAAAKKEKNEGVPENPSNAVPEKTQVN
UniProt
Q9DC71
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
Molecule details ›

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Small ribosomal subunit protein bS16m
Chain: M
Length: 135 amino acids
Theoretical weight: 15.22 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CPX7 (Residues: 1-135; Coverage: 100%)
Gene names: Mrps16, Rpms16
Pfam: Ribosomal protein S16
InterPro:
Small ribosomal subunit protein bS16m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein bS16m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein bS16m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9CPX7  
1135102030405060708090100110120130
 
50100MVQLTTIFCKAYHGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLSGFFPLHPMMITNAERLRRRRAREVLLASQKAESEAKETEAS
UniProt
Q9CPX7
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein uS17m
Chain: N
Length: 120 amino acids
Theoretical weight: 13.41 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CQE3 (Residues: 1-120; Coverage: 100%)
Gene names: Mrps17, Rpms17
Pfam: Ribosomal protein S17
InterPro:
Small ribosomal subunit protein uS17m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein uS17m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein uS17m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9CQE3  
1120102030405060708090100110120
 
50100MSIVRSSVHAKWVVGKVIGTAMIKTAKVRATRLVLDPYLLKYFNKRKTYFAHDALQQCSVGDIVLLRALPVPRSKHVKHELAEIIFKVGRVIDPVTGKPCAGTAYLESPLSEPREELKVS
UniProt
Q9CQE3
Chains
Domains
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS40
Chain: O
Length: 254 amino acids
Theoretical weight: 28.74 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q99N84 (Residues: 1-254; Coverage: 100%)
Gene name: Mrps18b
Pfam: Ribosomal protein S18
InterPro:
Small ribosomal subunit protein mS40 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS40 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS40 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q99N84  
125420406080100120140160180200220240
 
100200MAAPLRHTLLKLVPTLLRSSYVAQVPLQTLCTRGPPEEDAPSSLPVSPYESEPWKYLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVAGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARECGLLSYYVPQVEPRDADFGTVHGAVSVTPPAPTLLSGEPWYPWYSWQQPPERELSRLRRLYQGNLLEESGPPPESMPEMPTTPPAESSIEQPGSQSA
UniProt
Q99N84
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Molecule details ›

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Small ribosomal subunit protein bS18m
Chain: P
Length: 143 amino acids
Theoretical weight: 16.3 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8R2L5 (Residues: 1-143; Coverage: 100%)
Gene name: Mrps18c
Pfam: Ribosomal protein S18
InterPro:
Small ribosomal subunit protein bS18m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein bS18m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein bS18m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q8R2L5  
114320406080100120140
 
50100MAALVALCSGIGRKNLTTAAGCFTDRGTQAVSVIWRRCFSQFEQVTSNEDLPVPMENPYKEPLKKCVLCEKRVDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQKMGFMPVTYKDPAYLKDPRVCNIRYRE
UniProt
Q8R2L5
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein bS21m
Chain: Q
Length: 86 amino acids
Theoretical weight: 10.49 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P58059 (Residues: 2-87; Coverage: 99%)
Gene names: Mrps21, Rpms21
Pfam: Ribosomal protein S21
InterPro: Small ribosomal subunit protein bS21
Small ribosomal subunit protein bS21m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein bS21m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein bS21m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: P58059  
1861020304050607080
 
20406080*KHLKFIARTVMVQEGNVEGAYRTLNRILTTDGLTEVISRRRYYEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWLGC
UniProt
P58059
Chains
Domains
Interaction interfaces
Sequence conservation
Molecule details ›

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Small ribosomal subunit protein mS22
Chain: R
Length: 359 amino acids
Theoretical weight: 41.26 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CXW2 (Residues: 1-359; Coverage: 100%)
Gene names: Mrps22, Rpms22
Pfam: Mitochondrial 28S ribosomal protein S22
InterPro: Small ribosomal subunit protein mS22
Small ribosomal subunit protein mS22 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS22 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS22 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9CXW2  
135950100150200250300350
 
100200300MAAVRTPLSLWRFQLGSRRARRVCTRATAQRHPDALLATRPQPFEVGQPRRLLSSEAESGSSEVKKPAFMDEEVQRILTKITGLDLQKTFRPAIQPLKPPTYKLMTQAQLEEATRLAVEAAKVRLKMPPVLEERKPINDVLAEDKILEGTETNKYVFTDISYNIPHRERFIVVREPSGTLRKASWEERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHADVLNLCVAQFEPDSAEYIKVHHQTYEDIDRHGKYELLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLVQLYHMLHPDGQSAQEAKEQAAEGVDLIKVFAKTEAQRGAYIELALQTYQEIVTSHSAAS
UniProt
Q9CXW2
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS23
Chain: S
Length: 177 amino acids
Theoretical weight: 20.38 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8VE22 (Residues: 1-177; Coverage: 100%)
Gene name: Mrps23
Pfam: Mitochondrial ribosomal protein S23
InterPro:
Small ribosomal subunit protein mS23 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS23 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS23 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q8VE22  
117720406080100120140160
 
50100150MAGSRLETVGSVFSRTRDLMRAGVLKEKPLWYDIYKAFPPLREPVFRRPRLRYGKAKADIQDIFYQEDQIRAKFFATYGSGQKAFDLFNPNFKSTCQRFVEKYTELQNLGETDEEKLFVETGKALLAEGIILRRVREARTVSVRLQASSEGHEPQEDDDLAQRGQVKQEPETAPSPP
UniProt
Q8VE22
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS25
Chain: T
Length: 171 amino acids
Theoretical weight: 19.95 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D125 (Residues: 1-171; Coverage: 100%)
Gene names: Mrps25, Rpms25
Pfam: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
InterPro:
Small ribosomal subunit protein mS25 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS25 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS25 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9D125  
117120406080100120140160
 
50100150MPMKGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST
UniProt
Q9D125
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS26
Chain: U
Length: 200 amino acids
Theoretical weight: 23.48 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q80ZS3 (Residues: 1-200; Coverage: 100%)
Gene name: Mrps26
Pfam: Mitochondrial ribosome subunit S26
InterPro: Small ribosomal subunit protein mS26
Small ribosomal subunit protein mS26 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS26 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS26 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q80ZS3  
120020406080100120140160180200
 
50100150200MLRALNRLAARPETRPPTPLLLPVRGRKTRHDPPAKSKVGRVQTPPAVDPAEFFVLTERYRQYRETVRALRLEFTLEVRRKLHEARAGVLAERKAQQAITEHRELMAWNRDENRRMQELRIARLQLEAQAQEVQKAEAQAQRAQEEQAWVQLKEQEVLKLQEEAKNFITRENLEARIEEALDSPKSYNWAVTKEGQVVRN
UniProt
Q80ZS3
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
Molecule details ›

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Small ribosomal subunit protein mS27
Chain: V
Length: 415 amino acids
Theoretical weight: 47.84 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8BK72 (Residues: 1-415; Coverage: 100%)
Gene name: Mrps27
Pfam: Mitochondrial 28S ribosomal protein S27
InterPro:
Small ribosomal subunit protein mS27 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS27 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS27 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q8BK72  
141550100150200250300350400
 
100200300400MAAPMVRCGMLLARRLDASRLCLAGKRCLLSAAYVDSHQWEAREKEEYHLADLASLMDKAYERKLPVSSLSISRFVDNIASREDLDSAEYYLYKFRHSPNCWYLRDWTIHSWIRQCLKYGAQDKALYTLVNKVQYGIFPDNFTFNLLMDYFIKKGNYKDALSVVFEIMMQEAFDVPSTQFLSLYVLYRCLAEKTELTWEEERDFGASLLLSGLKQRNTVGLSSQLYGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDGVLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQELNRVESESLLTLTTQLVKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEYQALSAAEKAA
UniProt
Q8BK72
Chains
Domains
Interaction interfaces
Sequence conservation
Molecule details ›

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Small ribosomal subunit protein bS1m
Chain: W
Length: 186 amino acids
Theoretical weight: 20.56 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CY16 (Residues: 1-186; Coverage: 100%)
Gene name: Mrps28
Pfam: Mitochondrial ribosomal protein MRP-S35
InterPro: Small ribosomal subunit protein bS1m
Small ribosomal subunit protein bS1m in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein bS1m in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein bS1m in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9CY16  
118620406080100120140160180
 
50100150MAALCRSHAGTAGSRFLRALVFSKPLRNASTESGSESATHDSSAPRARSGGFASALERHSDLQRKAELRLESPKPVESFASMLRHSPLTQLGPAKDKLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRFLGGTTDTTILEADAVLLGLQEIRDSKSREEQPSK
UniProt
Q9CY16
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS29
Chain: X
Length: 391 amino acids
Theoretical weight: 44.77 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9ER88 (Residues: 1-391; Coverage: 100%)
Gene names: Dap3, Mrps29
Pfam: Mitochondrial ribosomal death-associated protein 3
InterPro:
Small ribosomal subunit protein mS29 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS29 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS29 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9ER88  
139150100150200250300350
 
100200300MLTGITRLFSRVQKLDPRCFLHMSVQATQNSQVPAERPRTVSRTSDSDPAKHGEQHEGQHYSIPLQDLKTVFPHGLPPRYMMQVKTFGEACLMVRKPALELLGYLKNTNFAHPAVRYLLYGEKGTGKTLSLCHAVHFCARHDWLILHIPDAHLWVKNCRELLQSTHNKQRFDQPLEASTWLKNFKTTNERFLSQIKVQEKYVWNKRESTEKGSPLGEVVEQGLTRVRNATDAVGVVLKELKAQSALGLFHLLVAVDGVNALWGRTTLKKEDRTLIAPEELSLVHNLRKMVKNDWHGGAIVLSLSQTGSLFKSRTAYLPHELLGKEGFNALEPFLPILIPNYNPKEFESSFQYYLENNWLQHEKASTEEGRKELRFLSNCNPEQLERLCASL
UniProt
Q9ER88
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS31
Chain: Y
Length: 384 amino acids
Theoretical weight: 43.95 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q61733 (Residues: 1-384; Coverage: 100%)
Gene names: Imogn38, Mrps31
Pfam: Mitochondrial 28S ribosomal protein S31
InterPro: Mitochondrial 28S ribosomal protein S31
Small ribosomal subunit protein mS31 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS31 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS31 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q61733  
138450100150200250300350
 
100200300MLHRIPAFLRPRPFSGLPLSCGNRDVSVAVLPAAQSGAVRTENNIQRHFCTSRSICSKKVDQSVPANEISQKAAESQGRGKETLKKDLLDIIKDMKVDLSTANVKTPKPRGRKPSASLEATVDRLQKAPEDPPKKRNEFLSPELVAAASAVADSLPFDKQTTKSELLRQLQQHEEELRAQKDREKRRISFTHIISNMKIAKSPSGRASTRPQHQIQFDEDMDSSLKQEKPTDFRKRKYLFKGKRLSIFADKAFADEPPEPEASPSLWEIEFAKQLASVADQPFENGFEEMIQWTKEGKLWEFPVNNEAGLDDDGSEFHEHIFLDKYLEDFPKQGPIRLFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKRDILKENNIAFT
UniProt
Q61733
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS33
Chain: Z
Length: 106 amino acids
Theoretical weight: 12.49 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D2R8 (Residues: 1-106; Coverage: 100%)
Gene names: Gdap3, Mrps33
Pfam: Mitochondrial ribosomal subunit S27
InterPro: Small ribosomal subunit protein mS33
Small ribosomal subunit protein mS33 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS33 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS33 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9D2R8  
1106102030405060708090100
 
50100MSPLSEYALRMSRLSARIFGEVARSTDSKSMKVVSLFSEQPLAKKKETYDWYPNHNTYFALMGNLRFLGLYRDEHQDFKDEQRRLKKLRGKGKPRKGEGKRATKKK
UniProt
Q9D2R8
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS34
Chain: 0
Length: 218 amino acids
Theoretical weight: 25.87 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9JIK9 (Residues: 1-218; Coverage: 100%)
Gene names: Mrps34, Tce2
Pfam: Mitochondrial 28S ribosomal protein S34
InterPro: Small ribosomal subunit protein mS34
Small ribosomal subunit protein mS34 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS34 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS34 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9JIK9  
121820406080100120140160180200
 
100200MARKKVRPRLIAELARRVRALREQRNQPRDSQLYALDYETLTRPHSGRRLPVRAWADVRRESRLLQLLARLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGRAWGILTFKGKSEDTAREIEQVMYHDWRLVPKHEEEAFTAFTAKPEDRLNSVPYPPLLRAMILAERQKNGDTSVQEPLLNLERTRMRPWDYPAKQETKGRAKGTPV
UniProt
Q9JIK9
Chains
Domains
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS35
Chain: 1
Length: 320 amino acids
Theoretical weight: 36.03 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8BJZ4 (Residues: 1-320; Coverage: 100%)
Gene name: Mrps35
Pfam: Mitochondrial ribosomal subunit protein
InterPro:
Small ribosomal subunit protein mS35 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS35 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS35 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q8BJZ4  
132050100150200250300
 
100200300MAAAALQLRQSLCPGPRVLRTFSSVASPAAPRAGPRTASRSERPMRRKALPPRTEKMDTDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKRHCAALKDFCTEWPAALDSDEKCEEHFPVEIDTADYVSSGPSIRNPKARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKATDVLTITTDRCPLKRQNYDYAVYLLTVLYHESWKTEDWENSKTEEDMDEYVWAKSSSENSVLQTLLQMRAAESSVAPSREELLGTKEVEDYQKCVVRLKNEGENEASLAQYKESVKRLLNLA
UniProt
Q8BJZ4
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS38
Chain: 3
Length: 200 amino acids
Theoretical weight: 23.35 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9DCJ7 (Residues: 1-200; Coverage: 100%)
Gene names: Aip, Akip, Aurkaip1, Mrps38
Pfam: Mitochondrial mRNA-processing protein COX24, C-terminal
InterPro: Ribosomal protein mS38, C-terminal
Small ribosomal subunit protein mS38 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS38 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS38 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q9DCJ7  
120020406080100120140160180200
 
50100150200MFLARLTSRLARTVVPWAGFSRSCPGSGVIGSYAFRPLYSLQPASPSRAASLPGKRTQSELEEFLVPRKMAISPLESWLTAQYLLPRRNVEVPVTLAPSQFYECPPRQGEEEAQQGVREAWDATPVQCKNVLKIRRRKMNHHKYRKLVKRTRFLRRKVREGRLKKKQIKFEKDLKRIWLKAGLKEAPENWQTPKIYLKNK
UniProt
Q9DCJ7
Chains
Domains
Interaction interfaces
Sequence conservation
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Small ribosomal subunit protein mS39
Chain: 4
Length: 685 amino acids
Theoretical weight: 77.89 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q14C51 (Residues: 1-685; Coverage: 100%)
Gene names: Mrps39, Ptcd3
Pfam:
InterPro:
Small ribosomal subunit protein mS39 in PDB entry 7pnt, assembly 1, front view.
Small ribosomal subunit protein mS39 in PDB entry 7pnt, assembly 1, side view.
Small ribosomal subunit protein mS39 in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q14C51  
168550100150200250300350400450500550600650
 
200400600MAAAAVAARRLSFRSGLVLLQTTRGTGVCEPKVCCRFYAGTESLPKVEGSDITGIEEIVIPKKKTWDKVAVLQALASTVNRDPTAAPYVFHDDPYLIPTSALESRSFLLAKKSGETAAKFIINSYPKYFQKDIAEPHIPCLMPEYFEPQIEDVSEAALEERIRLRKVRASVDMFDQLLQAGTTVSLETTNSLLDLLCYYGDQEPPADYPFQQTEHLENLEEAAEENNQTSKMESGPWKAQNNAERIFALMPEKNARSYCTMIRGMVKHRAYAQALNVYTELLNNRLSADVYTFNALIEAKTFILNEKFEEKWNDILDLLKHMVAQKVKPNLQTFNTILKGLRKCYSLGRIPALQILREMKHIGIEPSLATYHHIIHLFYPRDLSAIKMPSLIIYDIMNELEGRTFSPQDLDDGRFFQLAMSVCSSLRDLELAYQVHRLLNTGDNRKLVGHDPLRKVYYSKFFSLICSLEQIDVTLKWYKDLIPSVFLPHYQIFIGLLQALDVANRLELVPQIWKDSKEYSHTFRDALREEVLMLMARDKHPPELQVAFADCAADIKSTYEDQSARQPAFDWPANPLQYIAVLFLRGGRSQEAWKMLELFKKHKKIPRNELLEEFMDTAKASGSTALAIEVVKLASAFSLPIGESLAQRVVMDFTVDPEQKEALGNLTELNSSDGESSSDSDSDDK
UniProt
Q14C51
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Putative ribosome-binding factor A, mitochondrial
Chain: a
Length: 350 amino acids
Theoretical weight: 39.38 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q6P3B9 (Residues: 1-350; Coverage: 100%)
Gene name: Rbfa
Pfam: Ribosome-binding factor A
InterPro:
Putative ribosome-binding factor A, mitochondrial in PDB entry 7pnt, assembly 1, front view.
Putative ribosome-binding factor A, mitochondrial in PDB entry 7pnt, assembly 1, side view.
Putative ribosome-binding factor A, mitochondrial in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q6P3B9  
135050100150200250300350
 
100200300MWAGVAGLRGSCAGLQALWGGHRAALLLGRSPALHTSVASCGSKNLLKKFASKTRKKFWYEGPSLGSHLTPRPSKHEFLTKTTSKKTRKEDSIRLRVLNGLLYKSLTELLCTPQVSQEVYDLNVELSKVSVTSDFSACRVYWKTGVSAEQNKHTESVLQRSAAYMRHLLISQQTLRNVPPIVFVQDKRDLVLAEVDRLLAEADFGPPDERDDLDGLRNADAQVPHDSPEPAAHPNLCGIDHEALNKQIMEYKRKKERGLQCQSLAPPSGREQAPEPTRLLRKREKVRSRWQHRDASPRSFLLGEEDEDEDSSTEWECHAHEAEDDDDHQEEELGADRGAQRGLCGKREQG
UniProt
Q6P3B9
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
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Dimethyladenosine transferase 1, mitochondrial
Chain: c
Length: 345 amino acids
Theoretical weight: 39.02 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8JZM0 (Residues: 1-345; Coverage: 100%)
Gene name: Tfb1m
Pfam: Ribosomal RNA adenine dimethylase
InterPro:
Dimethyladenosine transferase 1, mitochondrial in PDB entry 7pnt, assembly 1, front view.
Dimethyladenosine transferase 1, mitochondrial in PDB entry 7pnt, assembly 1, side view.
Dimethyladenosine transferase 1, mitochondrial in PDB entry 7pnt, assembly 1, top view.
PDBe-KB: UniProt Coverage View: Q8JZM0  
134550100150200250300
 
100200300MAASGKLGTFRLPPLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGGITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQWEDDPPNVHIIGNLPFSVSTPLIIKWLENISLKDGPFVYGRTKMTLTFQKEVAERLVATTGSKQHSRLSIMAQYLCNVEHLFTIPGKAFVPKPKVDVGVVHLTPLIEPKIKQPFKLVEKVVQNAFQFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFTYNFREELKQKKSKGQEKDGDPESCGF
UniProt
Q8JZM0
Chains
Domains
Interaction interfaces
Sequence conservation
Molecule details ›

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RNA chain A
Name: 12S mitochondrial rRNA
Representative chains: A
Length: 956 nucleotides
Theoretical weight: 306.79 KDa
12S mitochondrial rRNA in PDB entry 7pnt, assembly 1, front view.
12S mitochondrial rRNA in PDB entry 7pnt, assembly 1, side view.
12S mitochondrial rRNA in PDB entry 7pnt, assembly 1, top view.
1956100200300400500600700800900
 
500
Chains
Chain A (auth A)
Rfam
Ligand binding sites
Interaction interfaces
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