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Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Mettl15

Source organism: Mus musculus
Biochemical function: structural constituent of ribosome
Biological process: mitochondrial translation
Cellular component: mitochondrion

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Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF01084
Domain description: Ribosomal protein S18
Occurring in:
  1. Small ribosomal subunit protein mS40
  2. Small ribosomal subunit protein bS18m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF01084 (Ribosomal protein S18) in Small ribosomal subunit protein mS40. Showing 1 copy in chain O.
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF01084 (Ribosomal protein S18) in Small ribosomal subunit protein bS18m. Showing 1 copy in chain P.

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. Small ribosomal subunit protein uS2m
The deposited structure of PDB entry 7pnv contains 2 copies of Pfam domain PF00318 (Ribosomal protein S2) in Small ribosomal subunit protein uS2m. Showing 2 copies in chain B.

PF01795
Domain description: MraW methylase family
Occurring in:
  1. 12S rRNA N(4)-cytidine methyltransferase METTL15
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF01795 (MraW methylase family) in 12S rRNA N4-methylcytidine methyltransferase. Showing 1 copy in chain FA [auth b].

PF02033
Domain description: Ribosome-binding factor A
Occurring in:
  1. Putative ribosome-binding factor A, mitochondrial
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF02033 (Ribosome-binding factor A) in Putative ribosome-binding factor A, mitochondrial. Showing 1 copy in chain EA [auth a].

PF08293
Domain description: Mitochondrial ribosomal subunit S27
Occurring in:
  1. Small ribosomal subunit protein mS33
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF08293 (Mitochondrial ribosomal subunit S27) in Small ribosomal subunit protein mS33. Showing 1 copy in chain Z.

PF15433
Domain description: Mitochondrial 28S ribosomal protein S31
Occurring in:
  1. Small ribosomal subunit protein mS31
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF15433 (Mitochondrial 28S ribosomal protein S31) in Small ribosomal subunit protein mS31. Showing 1 copy in chain Y.

PF10236
Domain description: Mitochondrial ribosomal death-associated protein 3
Occurring in:
  1. Small ribosomal subunit protein mS29
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF10236 (Mitochondrial ribosomal death-associated protein 3) in Small ribosomal subunit protein mS29. Showing 1 copy in chain X.

PF10246
Domain description: Mitochondrial ribosomal protein MRP-S35
Occurring in:
  1. Small ribosomal subunit protein bS1m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF10246 (Mitochondrial ribosomal protein MRP-S35) in Small ribosomal subunit protein bS1m. Showing 1 copy in chain W.

PF10037
Domain description: Mitochondrial 28S ribosomal protein S27
Occurring in:
  1. Small ribosomal subunit protein mS27
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF10037 (Mitochondrial 28S ribosomal protein S27) in Small ribosomal subunit protein mS27. Showing 1 copy in chain V.

PF14943
Domain description: Mitochondrial ribosome subunit S26
Occurring in:
  1. Small ribosomal subunit protein mS26
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF14943 (Mitochondrial ribosome subunit S26) in Small ribosomal subunit protein mS26. Showing 1 copy in chain U.

PF05047
Domain description: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Occurring in:
  1. Small ribosomal subunit protein mS25
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF05047 (Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ) in Small ribosomal subunit protein mS25. Showing 1 copy in chain T.

PF10484
Domain description: Mitochondrial ribosomal protein S23
Occurring in:
  1. Small ribosomal subunit protein mS23
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF10484 (Mitochondrial ribosomal protein S23) in Small ribosomal subunit protein mS23. Showing 1 copy in chain S.

PF10245
Domain description: Mitochondrial 28S ribosomal protein S22
Occurring in:
  1. Small ribosomal subunit protein mS22
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF10245 (Mitochondrial 28S ribosomal protein S22) in Small ribosomal subunit protein mS22. Showing 1 copy in chain R.

PF01165
Domain description: Ribosomal protein S21
Occurring in:
  1. Small ribosomal subunit protein bS21m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF01165 (Ribosomal protein S21) in Small ribosomal subunit protein bS21m. Showing 1 copy in chain Q.

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in Small ribosomal subunit protein uS17m. Showing 1 copy in chain N.

PF00886
Domain description: Ribosomal protein S16
Occurring in:
  1. Small ribosomal subunit protein bS16m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00886 (Ribosomal protein S16) in Small ribosomal subunit protein bS16m. Showing 1 copy in chain M.

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15m. Showing 1 copy in chain L.

PF00253
Domain description: Ribosomal protein S14p/S29e
Occurring in:
  1. Small ribosomal subunit protein uS14m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00253 (Ribosomal protein S14p/S29e) in Small ribosomal subunit protein uS14m. Showing 1 copy in chain K.

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in Small ribosomal subunit protein uS12m. Showing 1 copy in chain J.

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Small ribosomal subunit protein uS11m. Showing 1 copy in chain I.

PF00338
Domain description: Ribosomal protein S10p/S20e
Occurring in:
  1. Small ribosomal subunit protein uS10m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00338 (Ribosomal protein S10p/S20e) in Small ribosomal subunit protein uS10m. Showing 1 copy in chain H.

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Small ribosomal subunit protein uS9m. Showing 1 copy in chain G.

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7m. Showing 1 copy in chain F.

PF01250
Domain description: Ribosomal protein S6
Occurring in:
  1. Small ribosomal subunit protein bS6m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF01250 (Ribosomal protein S6) in Small ribosomal subunit protein bS6m. Showing 1 copy in chain E.

PF03719
Domain description: Ribosomal protein S5, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF03719 (Ribosomal protein S5, C-terminal domain) in Small ribosomal subunit protein uS5m. Showing 1 copy in chain D.

PF00333
Domain description: Ribosomal protein S5, N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF00333 (Ribosomal protein S5, N-terminal domain) in Small ribosomal subunit protein uS5m. Showing 1 copy in chain D.

PF21251
Domain description: Small ribosomal subunit protein uS5m, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF21251 (40S ribosomal protein rpS2 (S5p), N-terminal) in Small ribosomal subunit protein uS5m. Showing 1 copy in chain D.

PF14955
Domain description: Mitochondrial ribosome subunit S24
Occurring in:
  1. Small ribosomal subunit protein uS3m
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF14955 (Mitochondrial ribosome subunit S24) in Small ribosomal subunit protein uS3m. Showing 1 copy in chain C.

PF13812
Domain description: Pentatricopeptide repeat domain
Occurring in:
  1. Small ribosomal subunit protein mS39
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF13812 (Pentatricopeptide repeat domain) in Small ribosomal subunit protein mS39. Showing 1 copy in chain DA [auth 4].

PF22330
Domain description: Small ribosomal subunit protein mS39, PPR
Occurring in:
  1. Small ribosomal subunit protein mS39

PF08213
Domain description: Mitochondrial mRNA-processing protein COX24, C-terminal
Occurring in:
  1. Small ribosomal subunit protein mS38
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF08213 (Mitochondrial mRNA-processing protein COX24, C-terminal) in Small ribosomal subunit protein mS38. Showing 1 copy in chain CA [auth 3].

PF10213
Domain description: Mitochondrial ribosomal subunit protein
Occurring in:
  1. Small ribosomal subunit protein mS35
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF10213 (Mitochondrial ribosomal subunit protein ) in Small ribosomal subunit protein mS35. Showing 1 copy in chain BA [auth 1].

PF16053
Domain description: Mitochondrial 28S ribosomal protein S34
Occurring in:
  1. Small ribosomal subunit protein mS34
The deposited structure of PDB entry 7pnv contains 1 copy of Pfam domain PF16053 (Mitochondrial 28S ribosomal protein S34) in Small ribosomal subunit protein mS34. Showing 1 copy in chain AA [auth 0].

Rfam RNA family (Rfam)
RF02542
Domain description: Microsporidia small subunit ribosomal RNA
Occurring in:
  1. 12S mitochondrial rRNA
The deposited structure of PDB entry 7pnv contains 1 copy of Rfam domain RF02542 (Microsporidia small subunit ribosomal RNA) in 12S mitochondrial rRNA. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR008092
Domain description: Small ribosomal subunit protein mS29, metazoan-type
Occurring in:
  1. Small ribosomal subunit protein mS29
IPR001865
Domain description: Small ribosomal subunit protein uS2
Occurring in:
  1. Small ribosomal subunit protein uS2m
IPR005679
Domain description: Ribosomal protein uS12, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS12m
IPR002903
Domain description: Ribosomal RNA small subunit methyltransferase H
Occurring in:
  1. 12S rRNA N(4)-cytidine methyltransferase METTL15
IPR001648
Domain description: Small ribosomal subunit protein bS18
Occurring in:
  1. Small ribosomal subunit protein mS40
  2. Small ribosomal subunit protein bS18m
IPR036870
Domain description: Small ribosomal subunit protein bS18 superfamily
Occurring in:
  1. Small ribosomal subunit protein mS40
  2. Small ribosomal subunit protein bS18m
IPR000307
Domain description: Small ribosomal subunit protein bS16
Occurring in:
  1. Small ribosomal subunit protein bS16m
IPR012340
Domain description: Nucleic acid-binding, OB-fold
Occurring in:
  1. Small ribosomal subunit protein uS12m
  2. Small ribosomal subunit protein uS17m
IPR001911
Domain description: Small ribosomal subunit protein bS21
Occurring in:
  1. Small ribosomal subunit protein bS21m
IPR000589
Domain description: Small ribosomal subunit protein uS15
Occurring in:
  1. Small ribosomal subunit protein uS15m
IPR006032
Domain description: Small ribosomal subunit protein uS12
Occurring in:
  1. Small ribosomal subunit protein uS12m
IPR001971
Domain description: Small ribosomal subunit protein uS11
Occurring in:
  1. Small ribosomal subunit protein uS11m
IPR000529
Domain description: Small ribosomal subunit protein bS6
Occurring in:
  1. Small ribosomal subunit protein bS6m
IPR002885
Domain description: Pentatricopeptide repeat
Occurring in:
  1. Small ribosomal subunit protein mS39
  2. Small ribosomal subunit protein mS27
IPR011990
Domain description: Tetratricopeptide-like helical domain superfamily
Occurring in:
  1. Small ribosomal subunit protein mS39
  2. Small ribosomal subunit protein mS27
IPR023397
Domain description: S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily
Occurring in:
  1. 12S rRNA N(4)-cytidine methyltransferase METTL15
IPR029063
Domain description: S-adenosyl-L-methionine-dependent methyltransferase superfamily
Occurring in:
  1. 12S rRNA N(4)-cytidine methyltransferase METTL15
IPR013219
Domain description: Small ribosomal subunit protein mS33
Occurring in:
  1. Small ribosomal subunit protein mS33
IPR026299
Domain description: Mitochondrial 28S ribosomal protein S31
Occurring in:
  1. Small ribosomal subunit protein mS31
IPR019368
Domain description: Small ribosomal subunit protein mS29
Occurring in:
  1. Small ribosomal subunit protein mS29
IPR019375
Domain description: Small ribosomal subunit protein bS1m
Occurring in:
  1. Small ribosomal subunit protein bS1m
IPR026140
Domain description: Small ribosomal subunit protein mS26
Occurring in:
  1. Small ribosomal subunit protein mS26
IPR007741
Domain description: Ribosomal protein/NADH dehydrogenase domain
Occurring in:
  1. Small ribosomal subunit protein mS25
IPR019374
Domain description: Small ribosomal subunit protein mS22
Occurring in:
  1. Small ribosomal subunit protein mS22
IPR023803
Domain description: Small ribosomal subunit protein bS16 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein bS16m
IPR001209
Domain description: Small ribosomal subunit protein uS14
Occurring in:
  1. Small ribosomal subunit protein uS14m
IPR027486
Domain description: Small ribosomal subunit protein uS10 domain
Occurring in:
  1. Small ribosomal subunit protein uS10m
IPR036838
Domain description: Small ribosomal subunit protein uS10 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS10m
IPR000754
Domain description: Small ribosomal subunit protein uS9
Occurring in:
  1. Small ribosomal subunit protein uS9m
IPR036823
Domain description: Small ribosomal subunit protein uS7 domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS7m
IPR020568
Domain description: Ribosomal protein uS5 domain 2-type superfamily
Occurring in:
  1. Small ribosomal subunit protein uS5m
  2. Small ribosomal subunit protein uS9m
IPR014721
Domain description: Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
  1. Small ribosomal subunit protein uS5m
  2. Small ribosomal subunit protein uS9m
IPR013810
Domain description: Small ribosomal subunit protein uS5, N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5m
IPR026146
Domain description: Small ribosomal subunit protein uS3m, metazoan
Occurring in:
  1. Small ribosomal subunit protein uS3m
IPR005706
Domain description: Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid
Occurring in:
  1. Small ribosomal subunit protein uS2m
IPR013177
Domain description: Ribosomal protein mS38, C-terminal
Occurring in:
  1. Small ribosomal subunit protein mS38
IPR032053
Domain description: Small ribosomal subunit protein mS34
Occurring in:
  1. Small ribosomal subunit protein mS34
IPR020053
Domain description: Ribosome-binding factor A, conserved site
Occurring in:
  1. Putative ribosome-binding factor A, mitochondrial
IPR000238
Domain description: Ribosome-binding factor A
Occurring in:
  1. Putative ribosome-binding factor A, mitochondrial
IPR023799
Domain description: Ribosome-binding factor A domain superfamily
Occurring in:
  1. Putative ribosome-binding factor A, mitochondrial
IPR015946
Domain description: K homology domain-like, alpha/beta
Occurring in:
  1. Putative ribosome-binding factor A, mitochondrial
IPR039212
Domain description: Ribosome-binding factor A, mitochondrial
Occurring in:
  1. Putative ribosome-binding factor A, mitochondrial
IPR034913
Domain description: mS27/PTCD2
Occurring in:
  1. Small ribosomal subunit protein mS27
IPR019266
Domain description: Small ribosomal subunit protein mS27
Occurring in:
  1. Small ribosomal subunit protein mS27
IPR036249
Domain description: Thioredoxin-like superfamily
Occurring in:
  1. Small ribosomal subunit protein mS25
IPR040049
Domain description: Ribosomal subunit protein mS25/mL61, mitochondrial
Occurring in:
  1. Small ribosomal subunit protein mS25
IPR023611
Domain description: Small ribosomal subunit protein mS23, conserved domain
Occurring in:
  1. Small ribosomal subunit protein mS23
IPR019520
Domain description: Small ribosomal subunit protein mS23, metazoa
Occurring in:
  1. Small ribosomal subunit protein mS23
IPR018275
Domain description: Small ribosomal subunit protein bS18, conserved site
Occurring in:
  1. Small ribosomal subunit protein bS18m
IPR040054
Domain description: Small ribosomal subunit protein mS40
Occurring in:
  1. Small ribosomal subunit protein mS40
IPR000266
Domain description: Small ribosomal subunit protein uS17
Occurring in:
  1. Small ribosomal subunit protein uS17m
IPR039193
Domain description: Small ribosomal subunit protein uS17m, metazoa
Occurring in:
  1. Small ribosomal subunit protein uS17m
IPR009068
Domain description: uS15/NS1, RNA-binding domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS15m
IPR005290
Domain description: Small ribosomal subunit protein uS15, bacterial-type
Occurring in:
  1. Small ribosomal subunit protein uS15m
IPR036967
Domain description: Small ribosomal subunit protein uS11 superfamily
Occurring in:
  1. Small ribosomal subunit protein uS11m
IPR001848
Domain description: Small ribosomal subunit protein uS10
Occurring in:
  1. Small ribosomal subunit protein uS10m
IPR040055
Domain description: Small ribosomal subunit protein uS10m
Occurring in:
  1. Small ribosomal subunit protein uS10m
IPR020574
Domain description: Small ribosomal subunit protein uS9, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS9m
IPR023798
Domain description: Small ribosomal subunit protein uS7 domain
Occurring in:
  1. Small ribosomal subunit protein uS7m
IPR000235
Domain description: Small ribosomal subunit protein uS7
Occurring in:
  1. Small ribosomal subunit protein uS7m
IPR035980
Domain description: Small ribosomal subunit protein bS6 superfamily
Occurring in:
  1. Small ribosomal subunit protein bS6m
IPR014717
Domain description: Translation elongation factor EF1B/small ribosomal subunit protein bS6
Occurring in:
  1. Small ribosomal subunit protein bS6m
IPR005324
Domain description: Small ribosomal subunit protein uS5, C-terminal
Occurring in:
  1. Small ribosomal subunit protein uS5m
IPR018192
Domain description: Small ribosomal subunit protein uS5, N-terminal, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS5m
IPR000851
Domain description: Small ribosomal subunit protein uS5
Occurring in:
  1. Small ribosomal subunit protein uS5m
IPR023591
Domain description: Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily
Occurring in:
  1. Small ribosomal subunit protein uS2m
IPR018130
Domain description: Small ribosomal subunit protein uS2, conserved site
Occurring in:
  1. Small ribosomal subunit protein uS2m
IPR037387
Domain description: Pentatricopeptide repeat domain-containing protein 3
Occurring in:
  1. Small ribosomal subunit protein mS39
IPR019349
Domain description: Small ribosomal subunit protein mS35, mitochondrial, conserved domain
Occurring in:
  1. Small ribosomal subunit protein mS35
IPR039848
Domain description: Small ribosomal subunit protein mS35, mitochondrial
Occurring in:
  1. Small ribosomal subunit protein mS35

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