7qiw

Electron Microscopy
2.35Å resolution

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Released:
Source organism: Solanum lycopersicum
Related structures: EMD-14001

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 45-mer (preferred)
PDBe Complex ID:
PDB-CPX-102780 (preferred)
Entry contents:
41 distinct polypeptide molecules
4 distinct RNA molecules
Macromolecules (45 distinct):
Large ribosomal subunit protein uL2 Chain: D
Molecule details ›
Chain: D
Length: 260 amino acids
Theoretical weight: 28.33 KDa
Source organism: Solanum lycopersicum
UniProt:
  • Canonical: P29766 (Residues: 1-260; Coverage: 100%)
Gene names: RPL2, RPL8
Sequence domains:
Large ribosomal subunit protein uL4 C-terminal domain-containing protein Chain: F
Molecule details ›
Chain: F
Length: 406 amino acids
Theoretical weight: 44.85 KDa
Source organism: Solanum lycopersicum
UniProt:
  • Canonical: A0A3Q7HW81 (Residues: 1-406; Coverage: 100%)
Gene name: LOC101259570
Sequence domains:
Ribosomal protein L3 Chain: E
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein Chain: G
Large ribosomal subunit protein uL6 N-terminal domain-containing protein Chain: H
Thaliana 60S ribosomal protein L7 Chain: I
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein Chain: J
Large ribosomal subunit protein uL6 alpha-beta domain-containing protein Chain: K
60S ribosomal protein L10 Chain: L
60S ribosomal protein L11 Chain: M
60S ribosomal protein L13 Chain: N
Large ribosomal subunit protein eL14 domain-containing protein Chain: O
Ribosomal protein L15 Chain: P
60S ribosomal protein L13a Chain: Q
50S ribosomal protein L22, chloroplastic Chain: R
Large ribosomal subunit protein uL15/eL18 domain-containing protein Chain: S
Ribosomal protein L19 Chain: T
60S ribosomal protein L18a Chain: U
60S ribosomal protein L21 Chain: V
60S ribosomal protein L22 Chain: W
60S ribosomal protein L23 Chain: X
TRASH domain-containing protein Chain: Y
Large ribosomal subunit protein uL23 N-terminal domain-containing protein Chain: Z
KOW domain-containing protein Chain: a
60S ribosomal protein L27 Chain: b
Large ribosomal subunit protein uL15/eL18 domain-containing protein Chain: c
60S ribosomal protein L29 Chain: d
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein Chain: e
60S ribosomal protein L31 Chain: f
60S ribosomal protein L32 Chain: g
60S ribosomal protein L35a Chain: h
60S ribosomal protein L34 Chain: i
Similar to 60S ribosomal protein L35 Chain: j
60S ribosomal protein L36 Chain: k
Ribosomal protein L37 Chain: l
Large ribosomal subunit protein eL38 Chain: m
60S ribosomal protein L39 Chain: n
Ubiquitin-like domain-containing protein Chain: o
60S ribosomal protein L44 Chain: p
60S ribosomal protein L37a Chain: q
Ribosomal eL28/Mak16 domain-containing protein Chain: r
tRNA Chain: s
25S ribosomal RNA Chain: 2
5S ribosomal RNA Chain: 5
5.8S ribosomal RNA Chain: 8

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 2.35Å
Relevant EMDB volumes: EMD-14001