Assemblies
Assembly Name:
50S ribosome subunit,60S ribosome subunit and Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein and RNA
Multimeric state:
hetero 45-mer
Accessible surface area:
585147.44 Å2
Buried surface area:
476693.93 Å2
Dissociation area:
1,683.64
Å2
Dissociation energy (ΔGdiss):
12.68
kcal/mol
Dissociation entropy (TΔSdiss):
12.38
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-102780
Macromolecules
Chain: D
Length: 260 amino acids
Theoretical weight: 28.33 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam:
InterPro:
Length: 260 amino acids
Theoretical weight: 28.33 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
P29766 (Residues: 1-260; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2
- Nucleic acid-binding, OB-fold
- Large ribosomal subunit protein uL2, RNA-binding domain
- Large ribosomal subunit protein uL2, domain 2
- Large ribosomal subunit protein uL2, C-terminal
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL2, domain 3
- Large ribosomal subunit protein uL2, conserved site

P29766
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: F
Length: 406 amino acids
Theoretical weight: 44.85 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam:
InterPro:
Length: 406 amino acids
Theoretical weight: 44.85 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7HW81 (Residues: 1-406; Coverage: 100%)
Pfam:
InterPro:

A0A3Q7HW81
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: E
Length: 389 amino acids
Theoretical weight: 44.52 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal protein L3
InterPro:
Length: 389 amino acids
Theoretical weight: 44.52 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
Q6SKP4 (Residues: 1-389; Coverage: 100%)
Pfam: Ribosomal protein L3
InterPro:

Q6SKP4
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: G
Length: 301 amino acids
Theoretical weight: 34.67 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 301 amino acids
Theoretical weight: 34.67 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7H274 (Residues: 1-301; Coverage: 100%)
InterPro:

A0A3Q7H274
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
Chain: H
Length: 229 amino acids
Theoretical weight: 25.62 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 229 amino acids
Theoretical weight: 25.62 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7GMA5 (Residues: 1-229; Coverage: 100%)
InterPro:

A0A3Q7GMA5
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: I
Length: 242 amino acids
Theoretical weight: 28.06 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam:
InterPro:
Length: 242 amino acids
Theoretical weight: 28.06 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
M1BRF8 (Residues: 1-242; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL30
- Large ribosomal subunit protein uL30, N-terminal, eukaryotes
- Large ribosomal subunit protein uL30, eukaryotic
- Large ribosomal subunit protein uL30, eukaryotic/archaeal
- Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
- Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
- Large ribosomal subunit protein uL30, conserved site

M1BRF8
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: J
Length: 258 amino acids
Theoretical weight: 29.36 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 258 amino acids
Theoretical weight: 29.36 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7GV73 (Residues: 105-362; Coverage: 75%)
InterPro:

A0A3Q7GV73
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: K
Length: 194 amino acids
Theoretical weight: 22 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 194 amino acids
Theoretical weight: 22 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7JDZ0 (Residues: 1-194; Coverage: 100%)
InterPro:

A0A3Q7JDZ0
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: L
Length: 220 amino acids
Theoretical weight: 24.91 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal protein L16p/L10e
InterPro:
Length: 220 amino acids
Theoretical weight: 24.91 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
Q3SC85 (Residues: 1-220; Coverage: 100%)
Pfam: Ribosomal protein L16p/L10e
InterPro:

Q3SC85
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: M
Length: 181 amino acids
Theoretical weight: 20.83 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam:
InterPro:
Length: 181 amino acids
Theoretical weight: 20.83 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
K4CG62 (Residues: 1-181; Coverage: 100%)
Pfam:
InterPro:

K4CG62
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: N
Length: 206 amino acids
Theoretical weight: 23.62 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal protein L13e
InterPro:
Length: 206 amino acids
Theoretical weight: 23.62 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7JCM5 (Residues: 1-206; Coverage: 100%)
Pfam: Ribosomal protein L13e
InterPro:

A0A3Q7JCM5
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: O
Length: 133 amino acids
Theoretical weight: 15.4 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 133 amino acids
Theoretical weight: 15.4 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7J0J5 (Residues: 1-133; Coverage: 100%)
InterPro:

A0A3Q7J0J5
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: P
Length: 204 amino acids
Theoretical weight: 24.23 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 204 amino acids
Theoretical weight: 24.23 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7HQH0 (Residues: 1-204; Coverage: 100%)
InterPro:

A0A3Q7HQH0
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: Q
Length: 206 amino acids
Theoretical weight: 23.61 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal protein L13
InterPro:
Length: 206 amino acids
Theoretical weight: 23.61 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A6N2B4A3 (Residues: 1-206; Coverage: 100%)
Pfam: Ribosomal protein L13
InterPro:

A0A6N2B4A3
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: R
Length: 173 amino acids
Theoretical weight: 19.79 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 173 amino acids
Theoretical weight: 19.79 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7FNQ5 (Residues: 1-173; Coverage: 100%)
InterPro:

A0A3Q7FNQ5
Chains
Domains
Flexibility predictions
Ligand binding sites
Sequence conservation
Chain: S
Length: 187 amino acids
Theoretical weight: 20.76 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal protein 60S L18 and 50S L18e
InterPro:
Length: 187 amino acids
Theoretical weight: 20.76 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7I5W4 (Residues: 1-187; Coverage: 100%)
Pfam: Ribosomal protein 60S L18 and 50S L18e
InterPro:

A0A3Q7I5W4
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: T
Length: 213 amino acids
Theoretical weight: 24.79 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal protein L19e
InterPro:
Length: 213 amino acids
Theoretical weight: 24.79 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7GQ29 (Residues: 1-213; Coverage: 100%)
Pfam: Ribosomal protein L19e
InterPro:

A0A3Q7GQ29
Chains
Domains
Flexibility predictions
Ligand binding sites
Sequence conservation
Chain: U
Length: 178 amino acids
Theoretical weight: 21.48 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 178 amino acids
Theoretical weight: 21.48 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7IGB1 (Residues: 1-178; Coverage: 100%)
InterPro:

A0A3Q7IGB1
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: V
Length: 164 amino acids
Theoretical weight: 18.72 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal protein L21e
InterPro:
Length: 164 amino acids
Theoretical weight: 18.72 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7IJQ0 (Residues: 1-164; Coverage: 100%)
Pfam: Ribosomal protein L21e
InterPro:

A0A3Q7IJQ0
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: W
Length: 124 amino acids
Theoretical weight: 14 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 124 amino acids
Theoretical weight: 14 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7I7E8 (Residues: 1-124; Coverage: 100%)
InterPro:

A0A3Q7I7E8
Chains
Domains
Sequence conservation
Chain: X
Length: 140 amino acids
Theoretical weight: 15.04 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 140 amino acids
Theoretical weight: 15.04 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
K4CUW3 (Residues: 1-140; Coverage: 100%)
InterPro:

K4CUW3
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: Y
Length: 165 amino acids
Theoretical weight: 18.71 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 165 amino acids
Theoretical weight: 18.71 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7IN69 (Residues: 1-164; Coverage: 100%)
InterPro:

A0A3Q7IN69
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: Z
Length: 154 amino acids
Theoretical weight: 17.43 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 154 amino acids
Theoretical weight: 17.43 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7INK3 (Residues: 1-154; Coverage: 100%)
InterPro:

A0A3Q7INK3
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: a
Length: 146 amino acids
Theoretical weight: 16.75 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 146 amino acids
Theoretical weight: 16.75 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7FBC6 (Residues: 1-146; Coverage: 100%)
InterPro:

A0A3Q7FBC6
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: b
Length: 135 amino acids
Theoretical weight: 15.7 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 135 amino acids
Theoretical weight: 15.7 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7GZ83 (Residues: 1-135; Coverage: 100%)
InterPro:

A0A3Q7GZ83
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: c
Length: 148 amino acids
Theoretical weight: 16.48 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 148 amino acids
Theoretical weight: 16.48 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A0V0H357 (Residues: 1-148; Coverage: 100%)
InterPro:

A0A0V0H357
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: d
Length: 60 amino acids
Theoretical weight: 6.99 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro: Large ribosomal subunit protein eL29
Length: 60 amino acids
Theoretical weight: 6.99 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7GK12 (Residues: 1-60; Coverage: 100%)
InterPro: Large ribosomal subunit protein eL29

A0A3Q7GK12
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: e
Length: 112 amino acids
Theoretical weight: 12.37 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 112 amino acids
Theoretical weight: 12.37 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7E9D6 (Residues: 1-112; Coverage: 100%)
InterPro:

A0A3Q7E9D6
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: f
Length: 120 amino acids
Theoretical weight: 13.89 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 120 amino acids
Theoretical weight: 13.89 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7JRW8 (Residues: 1-120; Coverage: 100%)
InterPro:

A0A3Q7JRW8
Chains
Domains
Sequence conservation
Chain: g
Length: 133 amino acids
Theoretical weight: 15.67 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 133 amino acids
Theoretical weight: 15.67 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7F2B5 (Residues: 1-133; Coverage: 100%)
InterPro:

A0A3Q7F2B5
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: h
Length: 112 amino acids
Theoretical weight: 12.95 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 112 amino acids
Theoretical weight: 12.95 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7FPS6 (Residues: 1-112; Coverage: 100%)
InterPro:

A0A3Q7FPS6
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: i
Length: 120 amino acids
Theoretical weight: 13.82 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 120 amino acids
Theoretical weight: 13.82 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7GDM4 (Residues: 1-120; Coverage: 100%)
InterPro:

A0A3Q7GDM4
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: j
Length: 123 amino acids
Theoretical weight: 14.32 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 123 amino acids
Theoretical weight: 14.32 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
Q53U38 (Residues: 1-123; Coverage: 100%)
InterPro:

Q53U38
Chains
Domains
Interaction interfaces
Sequence conservation
Chain: k
Length: 110 amino acids
Theoretical weight: 12.41 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 110 amino acids
Theoretical weight: 12.41 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7GUG2 (Residues: 37-146; Coverage: 75%)
InterPro:

A0A3Q7GUG2
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
Chain: l
Length: 95 amino acids
Theoretical weight: 10.81 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 95 amino acids
Theoretical weight: 10.81 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7FV98 (Residues: 1-95; Coverage: 100%)
InterPro:
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A0A3Q7FV98
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: m
Length: 69 amino acids
Theoretical weight: 8.1 KDa
Source organism: Solanum lycopersicum
UniProt:
Pfam: Ribosomal L38e protein family
InterPro:
Length: 69 amino acids
Theoretical weight: 8.1 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
P46291 (Residues: 1-69; Coverage: 100%)
Pfam: Ribosomal L38e protein family
InterPro:
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P46291
Chains
Domains
Sequence conservation
Chain: n
Length: 51 amino acids
Theoretical weight: 6.49 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 51 amino acids
Theoretical weight: 6.49 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7J415 (Residues: 1-51; Coverage: 100%)
InterPro:
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A0A3Q7J415
Chains
Domains
Flexibility predictions
Interaction interfaces
Sequence conservation
Chain: o
Length: 128 amino acids
Theoretical weight: 14.75 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 128 amino acids
Theoretical weight: 14.75 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
K4B017 (Residues: 1-128; Coverage: 100%)
InterPro:
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K4B017
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: p
Length: 105 amino acids
Theoretical weight: 12.04 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 105 amino acids
Theoretical weight: 12.04 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7H1I0 (Residues: 1-105; Coverage: 100%)
InterPro:
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A0A3Q7H1I0
Chains
Domains
Flexibility predictions
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: q
Length: 92 amino acids
Theoretical weight: 10.28 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 92 amino acids
Theoretical weight: 10.28 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
K4CND1 (Residues: 1-92; Coverage: 100%)
InterPro:
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K4CND1
Chains
Domains
Ligand binding sites
Interaction interfaces
Sequence conservation
Chain: r
Length: 143 amino acids
Theoretical weight: 16.02 KDa
Source organism: Solanum lycopersicum
UniProt:
InterPro:
Length: 143 amino acids
Theoretical weight: 16.02 KDa
Source organism: Solanum lycopersicum
UniProt:
- Canonical:
A0A3Q7FVJ9 (Residues: 1-143; Coverage: 100%)
InterPro:
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A0A3Q7FVJ9
Chains
Domains
Interaction interfaces
Sequence conservation
Chain PA (auth s)
Interaction interfaces
Name:
25S ribosomal RNA
Representative chains: 2
Length: 3391 nucleotides
Theoretical weight: 1098.45 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
Representative chains: 2
Length: 3391 nucleotides
Theoretical weight: 1098.45 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
Chain QA (auth 2)
Rfam
Ligand binding sites
Interaction interfaces
Name:
5S ribosomal RNA
Representative chains: 5
Length: 120 nucleotides
Theoretical weight: 38.63 KDa
Rfam: 5S ribosomal RNA
Representative chains: 5
Length: 120 nucleotides
Theoretical weight: 38.63 KDa
Rfam: 5S ribosomal RNA
Chain RA (auth 5)
Rfam
Ligand binding sites
Interaction interfaces
Name:
5.8S ribosomal RNA
Representative chains: 8
Length: 165 nucleotides
Theoretical weight: 53.17 KDa
Rfam: 5.8S ribosomal RNA
Representative chains: 8
Length: 165 nucleotides
Theoretical weight: 53.17 KDa
Rfam: 5.8S ribosomal RNA
Chain SA (auth 8)
Rfam
Ligand binding sites
Interaction interfaces