› 7qoh

Electron Microscopy
3.32Å resolution

Unique vertex of the phicrAss001 virion with C5 symmetry imposed

Released:
DOI: 10.2210/pdb7qoh/pdb
PDB entry 7qoh coloured by chain, front view.
PDB entry 7qoh coloured by chain, side view.
PDB entry 7qoh coloured by chain, top view.
Source organism: Bacteroides phage crAss001
Primary publication:
Structural atlas of a human gut crassvirus.
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
OpenAccess logo Nature (2023)
PMID: 37138077
Related structures: EMD-14090

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
hetero 90-mer (preferred)
PDBe Complex ID:
PDB-CPX-216117 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Major capsid protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 504 amino acids
Theoretical weight: 57.1 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DVU6 (Residues: 1-504; Coverage: 100%)
Gene name: crAss001_32
Auxiliary capsid protein Chains: a, b, d, e, f
Molecule details ›
Chains: a, b, d, e, f
Length: 333 amino acids
Theoretical weight: 36.15 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DVS7 (Residues: 1-333; Coverage: 100%)
Gene name: crAss001_36
Portal vertex auxiliary protein Chains: g, h
Molecule details ›
Chains: g, h
Length: 104 amino acids
Theoretical weight: 11.33 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DTA3 (Residues: 1-104; Coverage: 100%)
Gene name: crAss001_57
Head fiber trimeric protein Chains: i, j, k
Molecule details ›
Chains: i, j, k
Length: 97 amino acids
Theoretical weight: 10.29 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DTC5 (Residues: 1-97; Coverage: 100%)
Gene name: crAss001_21
Sequence domains: Head fiber protein
Portal protein Chains: l, m
Molecule details ›
Chains: l, m
Length: 806 amino acids
Theoretical weight: 93.12 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DT68 (Residues: 1-806; Coverage: 100%)
Gene name: crAss001_20

Ligands and Environments

1 bound ligand:
Ligand MG 6 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.32Å
Relevant EMDB volumes: EMD-14090

Quick links

Citations

3 review citations

Megataxonomy and global ecology of the virosphere.
Koonin et al. (2024)
2 more