› 7qol

Electron Microscopy
3.33Å resolution

Tail assembly of the phicrAss001 virion with C6 symmetry imposed

Released:
DOI: 10.2210/pdb7qol/pdb
PDB entry 7qol coloured by chain, front view.
PDB entry 7qol coloured by chain, side view.
PDB entry 7qol coloured by chain, top view.
Source organism: Bacteroides phage crAss001
Primary publication:
Structural atlas of a human gut crassvirus.
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
OpenAccess logo Nature (2023)
PMID: 37138077
Related structures: EMD-14094

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 180-mer (preferred)
PDBe Complex ID:
PDB-CPX-216119 (preferred)
Entry contents:
11 distinct polypeptide molecules
Macromolecules (11 distinct):
Portal protein Chains: A, O
Molecule details ›
Chains: A, O
Length: 806 amino acids
Theoretical weight: 93.12 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DT68 (Residues: 1-806; Coverage: 100%)
Gene name: crAss001_20
Ring protein 1 Chains: B, Q
Molecule details ›
Chains: B, Q
Length: 236 amino acids
Theoretical weight: 27.48 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DT91 (Residues: 1-236; Coverage: 100%)
Gene name: crAss001_43
Ring protein 2 Chains: C, S
Molecule details ›
Chains: C, S
Length: 225 amino acids
Theoretical weight: 26.22 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DT87 (Residues: 1-225; Coverage: 100%)
Gene name: crAss001_40
Ring protein 3 Chains: D, T
Molecule details ›
Chains: D, T
Length: 230 amino acids
Theoretical weight: 26.08 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DV73 (Residues: 1-230; Coverage: 100%)
Gene name: crAss001_35
Ring protein 4/5 Chains: E, F, U, V
Molecule details ›
Chains: E, F, U, V
Length: 238 amino acids
Theoretical weight: 26.68 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DVC3 (Residues: 1-238; Coverage: 100%)
Gene name: crAss001_34
Tail hub protein A Chains: G, H, W, Z
Molecule details ›
Chains: G, H, W, Z
Length: 215 amino acids
Theoretical weight: 24.81 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DTH1 (Residues: 1-215; Coverage: 100%)
Gene name: crAss001_38
Tail hub protein B Chains: I, a
Molecule details ›
Chains: I, a
Length: 114 amino acids
Theoretical weight: 13.41 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DVM6 (Residues: 1-114; Coverage: 100%)
Gene name: crAss001_39
Right handed beta helix domain-containing protein Chains: J, K, L, b, c, d
Molecule details ›
Chains: J, K, L, b, c, d
Length: 832 amino acids
Theoretical weight: 92.4 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DVT1 (Residues: 1-832; Coverage: 100%)
Gene name: crAss001_22
Sequence domains: Right handed beta helix region
Cargo protein 1 Chains: M, N, e, f
Molecule details ›
Chains: M, N, e, f
Length: 842 amino acids
Theoretical weight: 90.91 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DV85 (Residues: 1-842; Coverage: 100%)
Gene name: crAss001_45
Muzzle protein Chain: P
Molecule details ›
Chain: P
Length: 1371 amino acids
Theoretical weight: 156.46 KDa
Source organism: Bacteroides phage crAss001
UniProt:
  • Canonical: A0A385DVD6 (Residues: 1-1371; Coverage: 100%)
Gene name: crAss001_44
Muzzle bound helix Chain: R
Molecule details ›
Chain: R
Length: 14 amino acids
Theoretical weight: 1.21 KDa
Source organism: Bacteroides phage crAss001

Ligands and Environments

1 bound ligand:
Ligand MG 2 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.33Å
Relevant EMDB volumes: EMD-14094

Quick links

Citations

2 citation in other articles

Characterization of crAss-like phage isolates highlights Crassvirales genetic heterogeneity and worldwide distribution.
Ramos-Barbero et al. (2023)
1 more