7s83

X-ray diffraction
2.52Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-534681 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
ShAb02 VNAR Chain: B
Molecule details ›
Chain: B
Length: 128 amino acids
Theoretical weight: 14.34 KDa
Source organism: Ginglymostoma cirratum
Expression system: Homo sapiens
Spike protein S1 Chain: C
Molecule details ›
Chain: C
Length: 205 amino acids
Theoretical weight: 23.07 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 331-527; Coverage: 16%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding
ShAb01 VNAR Chain: A
Molecule details ›
Chain: A
Length: 131 amino acids
Theoretical weight: 14.9 KDa
Source organism: Ginglymostoma cirratum
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-E
Spacegroup: P212121
Unit cell:
a: 51.052Å b: 62.791Å c: 147.858Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.235 0.233 0.278
Expression system: Homo sapiens