7sof

Electron Microscopy
3.6Å resolution

SARS-CoV-2 S NTD B.1.617.1 kappa variant S2X303 Local Refinement

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-209928 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
S2X303 Fab light chain Chain: L
Molecule details ›
Chain: L
Length: 105 amino acids
Theoretical weight: 11.27 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
S2X303 Fab heavy chain Chain: H
Molecule details ›
Chain: H
Length: 125 amino acids
Theoretical weight: 13.74 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Spike glycoprotein Chain: A
Molecule details ›
Chain: A
Length: 1277 amino acids
Theoretical weight: 141.87 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1208; Coverage: 95%)
Gene names: 2, S
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.6Å
Relevant EMDB volumes: EMD-25269
Expression system: Homo sapiens