› 7suk

Electron Microscopy
3.99Å resolution

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Released:
DOI: 10.2210/pdb7suk/pdb
PDB entry 7suk coloured by chain, front view.
PDB entry 7suk coloured by chain, side view.
PDB entry 7suk coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Artificial intelligence-assisted cryoEM structure of Bfr2-Lcp5 complex observed in the yeast small subunit processome.
Zhao Y, Rai J, Xu C, He H, Li H
OpenAccess logo Commun Biol 5 523 (2022)
PMID: 35650250
Related structures: EMD-25441

Function and Biology Details

Reaction catalysed: 
S-adenosyl-L-methionine + pseudouridine(1191) in yeast 18S rRNA = S-adenosyl-L-homocysteine + N(1)-methylpseudouridine(1191) in yeast 18S rRNA
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 70-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-216238 (preferred)
Entry contents:
63 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (66 distinct):
U3 small nucleolar RNA-associated protein MPP10 Chain: NA
Molecule details ›
Chain: NA
Length: 245 amino acids
Theoretical weight: 28.23 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P47083 (Residues: 295-539; Coverage: 41%)
Gene names: J1411, MPP10, YJR002W, YJR83.5
Sequence domains: Mpp10 protein
Nucleolar protein 56 Chain: SA
Molecule details ›
Chain: SA
Length: 413 amino acids
Theoretical weight: 45.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12460 (Residues: 3-415; Coverage: 82%)
Gene names: L8167.9, NOP56, SIK1, YLR197W
Sequence domains:
Something about silencing protein 10 Chain: NB
Molecule details ›
Chain: NB
Length: 180 amino acids
Theoretical weight: 20.01 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12136 (Residues: 431-610; Coverage: 30%)
Gene names: D1545, SAS10, UTP3, YDL153C
Sequence domains: Sas10 C-terminal domain
Small ribosomal subunit protein uS13A Chain: L3
Molecule details ›
Chain: L3
Length: 127 amino acids
Theoretical weight: 14.52 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX55 (Residues: 2-120; Coverage: 82%)
Gene names: D9461.35, RPS18A, YDR450W
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein eS4A Chain: L4
Molecule details ›
Chain: L4
Length: 228 amino acids
Theoretical weight: 25.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX35 (Residues: 14-241; Coverage: 87%)
Gene names: J2186, RPS4A, RPS7B, YJR145C
Sequence domains:
Small ribosomal subunit protein uS7 Chain: L5
Molecule details ›
Chain: L5
Length: 213 amino acids
Theoretical weight: 23.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26783 (Residues: 13-225; Coverage: 95%)
Gene names: J2045, RPS2, RPS5, YJR123W
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS7A Chain: L7
Molecule details ›
Chain: L7
Length: 190 amino acids
Theoretical weight: 21.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26786 (Residues: 1-190; Coverage: 100%)
Gene names: RPS30, RPS7A, YOR096W, YOR3177W
Sequence domains: Ribosomal protein S7e
Small ribosomal subunit protein eS8A Chain: L8
Molecule details ›
Chain: L8
Length: 200 amino acids
Theoretical weight: 22.54 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX39 (Residues: 1-200; Coverage: 100%)
Gene names: RPS14A, RPS8A, YBL06.05, YBL0613, YBL072C
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein uS4A Chain: L9
Molecule details ›
Chain: L9
Length: 175 amino acids
Theoretical weight: 20.09 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: O13516 (Residues: 10-184; Coverage: 89%)
Gene names: RPS13A, RPS9A, YPL081W, YS11A
Sequence domains:
Small ribosomal subunit protein uS9A Chain: LC
Molecule details ›
Chain: LC
Length: 125 amino acids
Theoretical weight: 13.8 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX51 (Residues: 3-127; Coverage: 87%)
Gene names: RP61R, RPS16A, YM9375.12, YMR143W
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein uS17A Chain: LD
Molecule details ›
Chain: LD
Length: 156 amino acids
Theoretical weight: 17.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX47 (Residues: 1-156; Coverage: 100%)
Gene names: RPS11A, RPS18A, YD9813.03, YDR025W
Sequence domains:
Small ribosomal subunit protein uS8A Chain: LE
Molecule details ›
Chain: LE
Length: 127 amino acids
Theoretical weight: 14.26 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0W1 (Residues: 4-130; Coverage: 98%)
Gene names: J0355, RPS22A, RPS24, RPS24A, YJL190C
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein eS24A Chain: LF
Molecule details ›
Chain: LF
Length: 90 amino acids
Theoretical weight: 10.13 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX31 (Residues: 4-93; Coverage: 67%)
Gene names: RPS24A, RPS24EA, YER074W
Sequence domains: Ribosomal protein S24e
Small ribosomal subunit protein eS28A Chain: LG
Molecule details ›
Chain: LG
Length: 63 amino acids
Theoretical weight: 7.12 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E7X9 (Residues: 5-67; Coverage: 94%)
Gene names: O3600, RPS28A, RPS33, RPS33A, YOR167C
Sequence domains: Ribosomal protein S28e
NET1-associated nuclear protein 1 Chain: LH
Molecule details ›
Chain: LH
Length: 896 amino acids
Theoretical weight: 100.91 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02931 (Residues: 1-896; Coverage: 100%)
Gene names: NAN1, UTP17, YPL126W
Sequence domains: WD domain, G-beta repeat
U3 small nucleolar RNA-associated protein 15 Chain: LJ
Molecule details ›
Chain: LJ
Length: 513 amino acids
Theoretical weight: 57.77 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q04305 (Residues: 1-513; Coverage: 100%)
Gene names: UTP15, YM9582.18, YMR093W
Sequence domains:
U3 small nucleolar RNA-associated protein 9 Chain: LK
Molecule details ›
Chain: LK
Length: 123 amino acids
Theoretical weight: 13.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38882 (Residues: 428-515; Coverage: 15%)
Gene names: UTP9, YHR196W
U3 small nucleolar RNA-associated protein 5 Chain: LL
Molecule details ›
Chain: LL
Length: 555 amino acids
Theoretical weight: 62.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q04177 (Residues: 3-557; Coverage: 86%)
Gene names: D9509.17, UTP5, YDR398W
Sequence domains: Dip2/Utp12 Family
U3 small nucleolar RNA-associated protein 10 Chain: LM
Molecule details ›
Chain: LM
Length: 431 amino acids
Theoretical weight: 49.04 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P42945 (Residues: 2-426; Coverage: 24%)
Gene names: J0808, UTP10, YJL109C
Sequence domains: U3 small nucleolar RNA-associated protein 10
U3 small nucleolar RNA-associated protein 4 Chain: LN
Molecule details ›
Chain: LN
Length: 748 amino acids
Theoretical weight: 84.36 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06679 (Residues: 29-776; Coverage: 96%)
Gene names: UTP4, YDR324C
Sequence domains: WD domain, G-beta repeat
Periodic tryptophan protein 2 Chain: LO
Molecule details ›
Chain: LO
Length: 855 amino acids
Theoretical weight: 96.43 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25635 (Residues: 2-856; Coverage: 93%)
Gene names: PWP2, UTP1, YCR057C, YCR55C/YCR57C/YCR58C
Sequence domains:
U3 small nucleolar RNA-associated protein 6 Chain: LP
Molecule details ›
Chain: LP
Length: 420 amino acids
Theoretical weight: 46.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02354 (Residues: 2-326; Coverage: 74%)
Gene names: D9461.34, UTP6, YDR449C
Sequence domains:
U3 small nucleolar RNA-associated protein 12 Chain: LQ
Molecule details ›
Chain: LQ
Length: 939 amino acids
Theoretical weight: 104.7 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12220 (Residues: 5-943; Coverage: 100%)
Gene names: DIP2, L3116, L9233.1, UTP12, YLR129W
Sequence domains:
U3 small nucleolar RNA-associated protein 18 Chain: LS
Molecule details ›
Chain: LS
Length: 594 amino acids
Theoretical weight: 66.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40362 (Residues: 1-594; Coverage: 100%)
Gene names: HRE594, J1098, UTP18, YJL069C
Sequence domains: WD domain, G-beta repeat
U3 small nucleolar RNA-associated protein 21 Chain: LT
Molecule details ›
Chain: LT
Length: 921 amino acids
Theoretical weight: 102.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06078 (Residues: 19-939; Coverage: 98%)
Gene names: L8084.22, UTP21, YLR409C
Sequence domains:
Protein SOF1 Chain: LU
Molecule details ›
Chain: LU
Length: 465 amino acids
Theoretical weight: 53.82 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P33750 (Residues: 1-465; Coverage: 95%)
Gene names: L1339, SOF1, YLL011W
Sequence domains:
Ribosome biogenesis protein ENP2 Chain: LV
Molecule details ›
Chain: LV
Length: 362 amino acids
Theoretical weight: 41.37 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P48234 (Residues: 2-363; Coverage: 51%)
Gene names: ENP2, G6623, YGR145W
U3 small nucleolar RNA-associated protein 7 Chain: LW
Molecule details ›
Chain: LW
Length: 438 amino acids
Theoretical weight: 48.73 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40055 (Residues: 36-473; Coverage: 79%)
Gene names: KRE31, UTP7, YER082C
Sequence domains:
U3 small nucleolar ribonucleoprotein protein IMP3 Chain: LZ
Molecule details ›
Chain: LZ
Length: 182 amino acids
Theoretical weight: 21.8 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32899 (Residues: 2-183; Coverage: 100%)
Gene names: IMP3, YHR148W
Sequence domains:
Small ribosomal subunit protein uS11A Chain: NG
Molecule details ›
Chain: NG
Length: 111 amino acids
Theoretical weight: 11.65 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P06367 (Residues: 10-120; Coverage: 81%)
Gene names: CRY1, RPL59, RPS14A, YCR031C, YCR31C
Sequence domains: Ribosomal protein S11
KRR1 small subunit processome component Chain: NK
Molecule details ›
Chain: NK
Length: 175 amino acids
Theoretical weight: 20.17 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25586 (Residues: 38-212; Coverage: 55%)
Gene names: KRR1, YCL059C, YCL59C
Sequence domains:
rRNA 2'-O-methyltransferase fibrillarin Chains: SC, SD
Molecule details ›
Chains: SC, SD
Length: 247 amino acids
Theoretical weight: 27.34 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P15646 (Residues: 80-326; Coverage: 76%)
Gene names: D2870, LOT3, NOP1, YDL014W
Sequence domains: Fibrillarin
13 kDa ribonucleoprotein-associated protein Chains: SE, SF
Molecule details ›
Chains: SE, SF
Length: 121 amino acids
Theoretical weight: 13.08 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P39990 (Residues: 5-125; Coverage: 96%)
Gene names: SNU13, YEL026W
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal RNA-processing protein 9 Chain: SG
Molecule details ›
Chain: SG
Length: 464 amino acids
Theoretical weight: 52.53 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06506 (Residues: 107-570; Coverage: 81%)
Gene names: RRP9, YPR137W
Sequence domains: WD domain, G-beta repeat
RNA 3'-terminal phosphate cyclase-like protein Chain: SH
Molecule details ›
Chain: SH
Length: 360 amino acids
Theoretical weight: 39.59 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q08096 (Residues: 7-366; Coverage: 98%)
Gene names: RCL1, RTC1, YOL010W
Sequence domains:
Ribosome biogenesis protein BMS1 Chain: SI
Molecule details ›
Chain: SI
Length: 1123 amino acids
Theoretical weight: 127.89 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q08965 (Residues: 42-1164; Coverage: 95%)
Gene names: BMS1, YPL217C
Sequence domains:
Ribosomal RNA small subunit methyltransferase NEP1 Chains: SJ, SK
Molecule details ›
Chains: SJ, SK
Length: 236 amino acids
Theoretical weight: 26.19 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06287 (Residues: 16-251; Coverage: 94%)
Gene names: EMG1, L9470.5, NEP1, YLR186W
Sequence domains: EMG1/NEP1 methyltransferase
rRNA-processing protein FCF1 Chain: SL
Molecule details ›
Chain: SL
Length: 183 amino acids
Theoretical weight: 21 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q05498 (Residues: 7-189; Coverage: 97%)
Gene names: D9651.9, FCF1, YDR339C
Sequence domains: Fcf1
U3 small nucleolar ribonucleoprotein protein IMP4 Chain: SM
Molecule details ›
Chain: SM
Length: 290 amino acids
Theoretical weight: 33.54 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53941 (Residues: 1-290; Coverage: 100%)
Gene names: IMP4, N2353, YNL075W
Sequence domains: Brix domain
Ribosome biogenesis protein UTP30 Chain: SN
Molecule details ›
Chain: SN
Length: 247 amino acids
Theoretical weight: 28.58 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36144 (Residues: 11-257; Coverage: 90%)
Gene names: UTP30, YKR060W
Sequence domains: Ribosomal protein L1p/L10e family
Pre-rRNA-processing protein PNO1 Chain: SO
Molecule details ›
Chain: SO
Length: 179 amino acids
Theoretical weight: 20.19 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q99216 (Residues: 96-274; Coverage: 65%)
Gene names: DIM2, O3513, PNO1, RRP20, YOR145C, YOR3513C
Sequence domains:
rRNA-processing protein FCF2 Chain: SQ
Molecule details ›
Chain: SQ
Length: 167 amino acids
Theoretical weight: 20.14 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12035 (Residues: 50-216; Coverage: 77%)
Gene names: FCF2, L2128, YLR051C
Sequence domains: Fcf2 pre-rRNA processing
Small ribosomal subunit protein uS12A Chain: SR
Molecule details ›
Chain: SR
Length: 104 amino acids
Theoretical weight: 11.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX29 (Residues: 41-144; Coverage: 72%)
Gene names: G6178, RPS23A, RPS28A, YGR118W
Sequence domains: Ribosomal protein S12/S23
U3 small nucleolar RNA-associated protein 14 Chain: SS
Molecule details ›
Chain: SS
Length: 197 amino acids
Theoretical weight: 21.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q04500 (Residues: 276-350, 828-897; Coverage: 16%)
Gene names: UTP14, YML093W
Sequence domains: Utp14 protein
Nucleolar complex protein 14 Chain: ST
Molecule details ›
Chain: ST
Length: 806 amino acids
Theoretical weight: 89.73 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q99207 (Residues: 1-806; Coverage: 100%)
Gene names: D1566, NOP14, UTP2, YDL148C
Sequence domains: Nop14-like family
U3 small nucleolar RNA-associated protein 11 Chain: SY
Molecule details ›
Chain: SY
Length: 248 amino acids
Theoretical weight: 29.6 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P34247 (Residues: 3-250; Coverage: 99%)
Gene names: UTP11, YKL099C, YKL449
Sequence domains: Utp11 protein
Essential nuclear protein 1 Chain: SZ
Molecule details ›
Chain: SZ
Length: 261 amino acids
Theoretical weight: 30 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38333 (Residues: 205-465; Coverage: 54%)
Gene names: ENP1, MEG1, YBR1635, YBR247C
Sequence domains: Bystin
rRNA biogenesis protein RRP5 Chain: NJ
Molecule details ›
Chain: NJ
Length: 265 amino acids
Theoretical weight: 30.78 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q05022 (Residues: 1457-1721; Coverage: 15%)
Gene names: FMI1, RRP5, YM9959.11C, YMR229C
Sequence domains: Suppressor of forked protein (Suf)
U3 small nucleolar RNA-associated protein 22 Chain: NH
Molecule details ›
Chain: NH
Length: 1141 amino acids
Theoretical weight: 130.15 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53254 (Residues: 97-1237; Coverage: 92%)
Gene names: UTP22, YGR090W
Sequence domains:
Ribosomal RNA-processing protein 7 Chain: NI
Molecule details ›
Chain: NI
Length: 187 amino acids
Theoretical weight: 21.53 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25368 (Residues: 3-189; Coverage: 63%)
Gene names: RRP7, YCL031C, YCL184, YCL31C
Sequence domains: Rrp7 RRM-like N-terminal domain
Nucleolar complex protein 4 Chain: SU
Molecule details ›
Chain: SU
Length: 513 amino acids
Theoretical weight: 59.43 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06512 (Residues: 1-513; Coverage: 93%)
Gene names: NOC4, UTP19, YPR144C
Sequence domains: CBF/Mak21 family
U3 small nucleolar RNA-associated protein 8 Chain: LI
Molecule details ›
Chain: LI
Length: 687 amino acids
Theoretical weight: 77.47 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53276 (Residues: 27-713; Coverage: 96%)
Gene names: UTP8, YGR128C
Sequence domains:
U3 small nucleolar RNA-associated protein 16 Chain: ND
Molecule details ›
Chain: ND
Length: 60 amino acids
Theoretical weight: 7.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q08492 (Residues: 155-214; Coverage: 28%)
Gene names: BUD21, UTP16, YOR078W, YOR29-29
Sequence domains: U3 snoRNA associated
U3 small nucleolar RNA-associated protein 13 Chain: LR
Molecule details ›
Chain: LR
Length: 811 amino acids
Theoretical weight: 90.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q05946 (Residues: 7-817; Coverage: 99%)
Gene names: UTP13, YLR222C
Sequence domains:
Protein FAF1 Chain: NE
Molecule details ›
Chain: NE
Length: 240 amino acids
Theoretical weight: 27.1 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40546 (Residues: 91-330; Coverage: 69%)
Gene names: FAF1, YIL019W
Nucleolar protein 58 Chain: SB
Molecule details ›
Chain: SB
Length: 436 amino acids
Theoretical weight: 47.81 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12499 (Residues: 2-437; Coverage: 85%)
Gene names: NOP5, NOP58, O6108, YOR310C
Sequence domains:
Regulator of rDNA transcription protein 14 Chain: SV
Molecule details ›
Chain: SV
Length: 92 amino acids
Theoretical weight: 10.92 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40470 (Residues: 112-203; Coverage: 45%)
Gene names: RRT14, YIL127C
Sequence domains: Regular of rDNA transcription protein 14
U3 small nucleolar RNA-associated protein 20 Chain: SP
Molecule details ›
Chain: SP
Length: 2418 amino acids
Theoretical weight: 278.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P35194 (Residues: 4-2421; Coverage: 97%)
Gene names: UTP20, YBL004W, YBL0101
Sequence domains:
RNA cytidine acetyltransferase Chains: LX, LY
Molecule details ›
Chains: LX, LY
Length: 923 amino acids
Theoretical weight: 104.47 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53914 (Residues: 2-924; Coverage: 87%)
Gene names: KRE33, N1216, N1858, NAT10, RRA1, YNL132W
Sequence domains:
Small ribosomal subunit protein eS6A Chain: L6
Molecule details ›
Chain: L6
Length: 219 amino acids
Theoretical weight: 25.12 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX37 (Residues: 1-219; Coverage: 93%)
Gene names: LPG18C, RPS101, RPS10B, RPS6A, YPL090C
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein uS15 Chain: NF
Molecule details ›
Chain: NF
Length: 124 amino acids
Theoretical weight: 14.16 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05756 (Residues: 28-151; Coverage: 82%)
Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Sequence domains:
Protein BFR2 Chain: 5
Molecule details ›
Chain: 5
Length: 534 amino acids
Theoretical weight: 61.29 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06631 (Residues: 1-534; Coverage: 100%)
Gene names: BFR2, YDR299W
Sequence domains:
U3 small nucleolar ribonucleoprotein protein LCP5 Chain: 6
Molecule details ›
Chain: 6
Length: 357 amino acids
Theoretical weight: 40.86 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40079 (Residues: 1-357; Coverage: 100%)
Gene names: LCP5, SYGP-ORF43, YER127W
Sequence domains: Sas10/Utp3/C1D family
5' ETS Chain: L0
Molecule details ›
Chain: L0
Length: 700 nucleotides
Theoretical weight: 225.54 KDa
U3 snoRNA Chain: L2
Molecule details ›
Chain: L2
Length: 333 nucleotides
Theoretical weight: 106.5 KDa
Sequence domains: Fungal small nucleolar RNA U3
18S pre-rRNA Chain: 8
Molecule details ›
Chain: 8
Length: 1807 nucleotides
Theoretical weight: 582.05 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.99Å
Relevant EMDB volumes: EMD-25441

Quick links

Citations

1 citations in other articles

Molecular Dynamics and Other HPC Simulations for Drug Discovery.
Kotev et al. (2024)

1 mention without citation

Artificial intelligence-assisted cryoEM structure of Bfr2-Lcp5 complex observed in the yeast small subunit processome.
Zhao et al. (2022)