7t40

X-ray diffraction
1.7Å resolution

Function and Biology Details

Reactions catalysed:
GTP + a 5'-diphospho-[mRNA] = diphosphate + a 5'-(5'-triphosphoguanosine)-[mRNA]
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
TSAVLQ-|-SGFRK-NH(2) and SGVTFQ-|-GKFKK the two peptides corresponding to the two self-cleavage sites of the SARS 3C-like proteinase are the two most reactive peptide substrates. The enzyme exhibits a strong preference for substrates containing Gln at P1 position and Leu at P2 position.
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-125698 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
3C-like proteinase nsp5 Chain: A
Molecule details ›
Chain: A
Length: 313 amino acids
Theoretical weight: 34.31 KDa
Source organism: Betacoronavirus England 1
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: K9N638 (Residues: 3248-3553; Coverage: 7%)
Gene name: 1a
Sequence domains: Coronavirus endopeptidase C30

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 17-ID
Spacegroup: C2
Unit cell:
a: 101.605Å b: 58.056Å c: 49.899Å
α: 90° β: 112.7° γ: 90°
R-values:
R R work R free
0.158 0.156 0.195
Expression system: Escherichia coli BL21