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CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Electron Microscopy
3.2Å resolution
PDB entry 7tql coloured by chain, front view.
PDB entry 7tql coloured by chain, side view.
PDB entry 7tql coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
hetero 38-mer (preferred)
Entry contents: 35 distinct polypeptide molecules
2 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 38-mer
Accessible surface area: 434444.94 Å2
Buried surface area: 198169.64 Å2
Dissociation area: 1,573.7 Å2
Dissociation energy (ΔGdiss): 5.55 kcal/mol
Dissociation entropy (TΔSdiss): 12.26 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-130100

Macromolecules

Eukaryotic translation initiation factor 5B
Chain: 1
Length: 619 amino acids
Theoretical weight: 69.87 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O60841 (Residues: 602-625, 626-1219; Coverage: 51%)
Gene names: EIF5B, IF2, KIAA0741
Pfam:
InterPro:
Eukaryotic translation initiation factor 5B in PDB entry 7tql, assembly 1, front view.
Eukaryotic translation initiation factor 5B in PDB entry 7tql, assembly 1, side view.
Eukaryotic translation initiation factor 5B in PDB entry 7tql, assembly 1, top view.
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Eukaryotic translation initiation factor 1A, X-chromosomal
Chain: 4
Length: 90 amino acids
Theoretical weight: 10.38 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P47813 (Residues: 24-113; Coverage: 63%)
Gene names: EIF1A, EIF1AX, EIF4C
Pfam: Translation initiation factor 1A / IF-1
InterPro:
Eukaryotic translation initiation factor 1A, X-chromosomal in PDB entry 7tql, assembly 1, front view.
Eukaryotic translation initiation factor 1A, X-chromosomal in PDB entry 7tql, assembly 1, side view.
Eukaryotic translation initiation factor 1A, X-chromosomal in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS1; Small ribosomal subunit protein uS2
Chains: B, C
Length: 419 amino acids
Theoretical weight: 47.84 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P08865 (Residues: 2-207; Coverage: 70%)
  • Canonical: P61247 (Residues: 21-233; Coverage: 81%)
    • nullnull
Gene names: FTE1, LAMBR, LAMR1, MFTL, RPS3A, RPSA
Pfam:
InterPro:
Small ribosomal subunit protein eS1 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS1 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS1 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS5
Chain: D
Length: 218 amino acids
Theoretical weight: 24.09 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P15880 (Residues: 59-276; Coverage: 74%)
Gene names: RPS2, RPS4
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS4, X isoform
Chain: E
Length: 258 amino acids
Theoretical weight: 29.16 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62701 (Residues: 2-259; Coverage: 98%)
Gene names: CCG2, RPS4, RPS4X, SCAR
Pfam:
InterPro:
Small ribosomal subunit protein eS4, X isoform in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS4, X isoform in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS4, X isoform in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS3
Chain: F
Length: 225 amino acids
Theoretical weight: 24.97 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P23396 (Residues: 3-227; Coverage: 93%)
Gene names: OK/SW-cl.26, RPS3
Pfam:
InterPro:
Small ribosomal subunit protein uS3 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS3 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS3 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS6
Chain: G
Length: 226 amino acids
Theoretical weight: 26.16 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62753 (Residues: 1-226; Coverage: 91%)
Gene names: OK/SW-cl.2, RPS6
Pfam: Ribosomal protein S6e
InterPro:
Small ribosomal subunit protein eS6 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS6 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS6 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS7
Chain: H
Length: 185 amino acids
Theoretical weight: 21.19 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62081 (Residues: 8-192; Coverage: 95%)
Gene name: RPS7
Pfam: Ribosomal protein S7e
InterPro:
Small ribosomal subunit protein eS7 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS7 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS7 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS8
Chain: I
Length: 205 amino acids
Theoretical weight: 23.95 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62241 (Residues: 2-206; Coverage: 99%)
Gene names: OK/SW-cl.83, RPS8
Pfam: Ribosomal protein S8e
InterPro:
Small ribosomal subunit protein eS8 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS8 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS8 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS4
Chain: J
Length: 180 amino acids
Theoretical weight: 21.28 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P46781 (Residues: 2-181; Coverage: 93%)
Gene name: RPS9
Pfam:
InterPro:
Small ribosomal subunit protein uS4 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS4 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS4 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS7
Chain: K
Length: 189 amino acids
Theoretical weight: 21.33 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P46782 (Residues: 16-204; Coverage: 93%)
Gene name: RPS5
Pfam: Ribosomal protein S7p/S5e
InterPro:
Small ribosomal subunit protein uS7 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS17
Chain: L
Length: 147 amino acids
Theoretical weight: 17.17 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62280 (Residues: 2-148; Coverage: 93%)
Gene name: RPS11
Pfam:
InterPro:
Small ribosomal subunit protein uS17 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS17 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS17 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS10
Chain: M
Length: 97 amino acids
Theoretical weight: 11.62 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P46783 (Residues: 1-97; Coverage: 59%)
Gene name: RPS10
Pfam: Plectin/S10 domain
InterPro:
Small ribosomal subunit protein eS10 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS10 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS10 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS15
Chain: N
Length: 141 amino acids
Theoretical weight: 16.34 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62277 (Residues: 2-142; Coverage: 93%)
Gene name: RPS13
Pfam:
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS12
Chain: O
Length: 120 amino acids
Theoretical weight: 13.35 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P25398 (Residues: 10-129; Coverage: 91%)
Gene name: RPS12
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Small ribosomal subunit protein eS12 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS12 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS12 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS11
Chain: P
Length: 134 amino acids
Theoretical weight: 14.34 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62263 (Residues: 18-151; Coverage: 89%)
Gene names: PRO2640, RPS14
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS11 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS11 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS19
Chain: Q
Length: 115 amino acids
Theoretical weight: 13.59 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62841 (Residues: 15-129; Coverage: 79%)
Gene names: RIG, RPS15
Pfam: Ribosomal protein S19
InterPro:
Small ribosomal subunit protein uS19 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS19 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS19 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS9
Chain: R
Length: 139 amino acids
Theoretical weight: 15.77 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62249 (Residues: 8-146; Coverage: 95%)
Gene name: RPS16
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS9 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS9 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS17
Chain: S
Length: 132 amino acids
Theoretical weight: 15.25 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P08708 (Residues: 2-133; Coverage: 98%)
Gene names: RPS17, RPS17L
Pfam: Ribosomal S17
InterPro:
Small ribosomal subunit protein eS17 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS17 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS17 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS13
Chain: T
Length: 140 amino acids
Theoretical weight: 16.5 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62269 (Residues: 3-142; Coverage: 92%)
Gene names: D6S218E, RPS18
Pfam: Ribosomal protein S13/S18
InterPro:
Small ribosomal subunit protein uS13 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS13 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS13 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS19
Chain: U
Length: 139 amino acids
Theoretical weight: 15.41 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P39019 (Residues: 4-142; Coverage: 96%)
Gene name: RPS19
Pfam: Ribosomal protein S19e
InterPro:
Small ribosomal subunit protein eS19 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS19 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS19 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS10
Chain: V
Length: 101 amino acids
Theoretical weight: 11.51 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P60866 (Residues: 17-117; Coverage: 85%)
Gene name: RPS20
Pfam: Ribosomal protein S10p/S20e
InterPro:
Small ribosomal subunit protein uS10 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS10 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS10 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS8
Chain: W
Length: 129 amino acids
Theoretical weight: 14.73 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62244 (Residues: 2-130; Coverage: 99%)
Gene names: OK/SW-cl.82, RPS15A
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS8 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS8 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS12
Chain: X
Length: 141 amino acids
Theoretical weight: 15.63 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62266 (Residues: 2-142; Coverage: 99%)
Gene name: RPS23
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS12 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS12 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS24
Chain: Y
Length: 123 amino acids
Theoretical weight: 14.36 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62847 (Residues: 4-126; Coverage: 93%)
Gene name: RPS24
Pfam: Ribosomal protein S24e
InterPro:
Small ribosomal subunit protein eS24 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS24 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS24 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS21
Chain: Z
Length: 82 amino acids
Theoretical weight: 8.98 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P63220 (Residues: 1-82; Coverage: 99%)
Gene name: RPS21
Pfam: Ribosomal protein S21e
InterPro:
Small ribosomal subunit protein eS21 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS21 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS21 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS25
Chain: a
Length: 72 amino acids
Theoretical weight: 8.18 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62851 (Residues: 42-113; Coverage: 58%)
Gene name: RPS25
Pfam: S25 ribosomal protein
InterPro:
Small ribosomal subunit protein eS25 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS25 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS25 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS27
Chain: b
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P42677 (Residues: 2-83; Coverage: 98%)
Gene names: MPS1, RPS27
Pfam: Ribosomal protein S27
InterPro:
Small ribosomal subunit protein eS27 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS27 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS27 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS26
Chain: c
Length: 99 amino acids
Theoretical weight: 11.34 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62854 (Residues: 2-100; Coverage: 86%)
Gene name: RPS26
Pfam: Ribosomal protein S26e
InterPro:
Small ribosomal subunit protein eS26 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS26 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS26 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS28
Chain: d
Length: 58 amino acids
Theoretical weight: 6.45 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62857 (Residues: 8-65; Coverage: 84%)
Gene name: RPS28
Pfam: Ribosomal protein S28e
InterPro:
Small ribosomal subunit protein eS28 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS28 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS28 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS30
Chain: e
Length: 51 amino acids
Theoretical weight: 5.64 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62861 (Residues: 81-133; Coverage: 35%)
Gene name: FAU
Pfam: Ribosomal protein S30
InterPro: Small ribosomal subunit protein eS30
Small ribosomal subunit protein eS30 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS30 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS30 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein uS14
Chain: f
Length: 54 amino acids
Theoretical weight: 6.5 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62273 (Residues: 3-56; Coverage: 96%)
Gene name: RPS29
Pfam: Ribosomal protein S14p/S29e
InterPro:
Small ribosomal subunit protein uS14 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein uS14 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein uS14 in PDB entry 7tql, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein eS31
Chain: g
Length: 65 amino acids
Theoretical weight: 7.62 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62979 (Residues: 85-149; Coverage: 42%)
Gene names: RPS27A, UBA80, UBCEP1
Pfam: Ribosomal protein S27a
InterPro:
Small ribosomal subunit protein eS31 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS31 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS31 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein eS32
Chain: h
Length: 19 amino acids
Theoretical weight: 2.68 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P62945 (Residues: 1-19; Coverage: 76%)
Gene name: RPL41
Pfam: Ribosomal protein L41
InterPro: Large ribosomal subunit protein eS32
Small ribosomal subunit protein eS32 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein eS32 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein eS32 in PDB entry 7tql, assembly 1, top view.
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Small ribosomal subunit protein RACK1
Chain: j
Length: 314 amino acids
Theoretical weight: 34.73 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P63244 (Residues: 2-315; Coverage: 99%)
Gene names: GNB2L1, HLC7, PIG21, RACK1
Pfam: WD domain, G-beta repeat
InterPro:
Small ribosomal subunit protein RACK1 in PDB entry 7tql, assembly 1, front view.
Small ribosomal subunit protein RACK1 in PDB entry 7tql, assembly 1, side view.
Small ribosomal subunit protein RACK1 in PDB entry 7tql, assembly 1, top view.
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RNA chain 2
Name: 18S Ribosomal RNA
Representative chains: 2
Length: 1656 nucleotides
Theoretical weight: 534.54 KDa
Rfam: Eukaryotic small subunit ribosomal RNA
18S Ribosomal RNA in PDB entry 7tql, assembly 1, front view.
18S Ribosomal RNA in PDB entry 7tql, assembly 1, side view.
18S Ribosomal RNA in PDB entry 7tql, assembly 1, top view.
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RNA chain 3
Name: Human Met-tRNAiMet
Representative chains: 3
Length: 75 nucleotides
Theoretical weight: 24.23 KDa
Rfam: tRNA
Human Met-tRNAiMet in PDB entry 7tql, assembly 1, front view.
Human Met-tRNAiMet in PDB entry 7tql, assembly 1, side view.
Human Met-tRNAiMet in PDB entry 7tql, assembly 1, top view.
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