› 7us9

Electron Microscopy
3.8Å resolution

CCoV-HuPn-2018 S in the proximal conformation (local refinement of domain 0)

Released:
DOI: 10.2210/pdb7us9/pdb
PDB entry 7us9 coloured by chain, front view.
PDB entry 7us9 coloured by chain, side view.
PDB entry 7us9 coloured by chain, top view.
Source organism: unidentified human coronavirus
Primary publication:
Structure, receptor recognition, and antigenicity of the human coronavirus CCoV-HuPn-2018 spike glycoprotein.
Tortorici MA, Walls AC, Joshi A, Park YJ, Eguia RT, Miranda MC, Kepl E, Dosey A, Stevens-Ayers T, Boeckh MJ, Telenti A, Lanzavecchia A, King NP, Corti D, Bloom JD, Veesler D
OpenAccess logo Cell 185 2279-2291.e17 (2022)
PMID: 35700730
Related structures: EMD-26729

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106000 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Spike glycoprotein Chain: A
Molecule details ›
Chain: A
Length: 267 amino acids
Theoretical weight: 29.96 KDa
Source organism: unidentified human coronavirus
Expression system: mammal environmental sample
UniProt:
  • Canonical: A0A8E6CMP0 (Residues: 17-251; Coverage: 16%)
Gene name: S

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Ligand NAG 2 x NAG
1 bound ligand:
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-26729
Expression system: mammal environmental sample

Quick links

Citations

1 review citation

Transmissible Gastroenteritis Virus: An Update Review and Perspective.
Chen et al. (2023)
8 other articles

1 mention without citation

Structure, receptor recognition, and antigenicity of the human coronavirus CCoV-HuPn-2018 spike glycoprotein.
Tortorici et al. (2022)