› 7v78

Electron Microscopy
3.4Å resolution

Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1), one RBD-up conformation 1

Released:
DOI: 10.2210/pdb7v78/pdb
PDB entry 7v78 coloured by chain, front view.
PDB entry 7v78 coloured by chain, side view.
PDB entry 7v78 coloured by chain, top view.
Source organism: Severe acute respiratory syndrome coronavirus 2
Entry authors: Yang TJ, Yu PY, Chang YC, Hsu STD
Related structures: EMD-31762

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-144650 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1283 amino acids
Theoretical weight: 142.25 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1208; Coverage: 95%)
Gene names: 2, S
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer
1 bound ligand:
Ligand NAG 19 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.4Å
Relevant EMDB volumes: EMD-31762
Expression system: Homo sapiens

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