› 7vg8

X-ray diffraction
2.04Å resolution

TYLCV Rep-DNA

Released:
DOI: 10.2210/pdb7vg8/pdb
PDB entry 7vg8 coloured by chain, front view.
PDB entry 7vg8 coloured by chain, side view.
PDB entry 7vg8 coloured by chain, top view.
Source organisms:
Entry authors: Zhang SY, Wang CN

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122226 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct DNA molecule
Macromolecules (2 distinct):
Replication-associated protein Chain: A
Molecule details ›
Chain: A
Length: 112 amino acids
Theoretical weight: 13.09 KDa
Source organism: Tomato yellow leaf curl virus
Expression system: prokaryote coculture
UniProt:
  • Canonical: H6WA92 (Residues: 5-116; Coverage: 31%)
Sequence domains: Geminivirus Rep catalytic domain
DNA (5'-((DT)P*(DA)P*(DA)P*(DT)P*(DA)P*(DT)P*(DT)P*(DA)*(DC)P*)-3') Chain: C
Molecule details ›
Chain: C
Length: 9 nucleotides
Theoretical weight: 2.71 KDa
Source organism: Tomato yellow leaf curl virus-IL [MX: SLP:11]
Expression system: DNA satellites

Ligands and Environments

1 bound ligand:
Ligand MN 1 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL02U1
Spacegroup: P41
Unit cell:
a: 67.976Å b: 67.976Å c: 40.433Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.224 0.222 0.267
Expression systems:
  • prokaryote coculture
  • DNA satellites

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