7vly

Electron Microscopy
2.45Å resolution

Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1

Released:
Primary publication:
Structural Basis of Pore Formation in the Mannose Phosphotransferase System by Pediocin PA-1.
Appl Environ Microbiol 88 e0199221 (2022)
PMID: 34851716
Related structures: EMD-32031

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-151468 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Lmo0098 protein Chains: D, G, Z
Molecule details ›
Chains: D, G, Z
Length: 303 amino acids
Theoretical weight: 33.4 KDa
Source organism: Listeria monocytogenes
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8YAM0 (Residues: 1-303; Coverage: 100%)
Gene name: lmo0098
Sequence domains: PTS system mannose/fructose/sorbose family IID component
Bacteriocin pediocin PA-1 Chains: A, E, H
Molecule details ›
Chains: A, E, H
Length: 47 amino acids
Theoretical weight: 5 KDa
Source organism: Pediococcus acidilactici
Expression system: Escherichia coli
UniProt:
  • Canonical: P29430 (Residues: 19-62; Coverage: 71%)
Gene names: pap, papA, pedA
Sequence domains: Class II bacteriocin

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.45Å
Relevant EMDB volumes: EMD-32031
Expression system: Escherichia coli