7vop

Electron Microscopy
8.7Å resolution

Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit

Released:
Source organism: Xenopus laevis
Related structures: EMD-32056

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 32-mer (preferred)
PDBe Complex ID:
PDB-CPX-103292 (preferred)
Entry contents:
15 distinct polypeptide molecules
Macromolecules (15 distinct):
Nuclear pore complex protein Nup85 Chains: A, J
Molecule details ›
Chains: A, J
Length: 653 amino acids
Theoretical weight: 75.16 KDa
Source organism: Xenopus laevis
UniProt:
  • Canonical: Q68FJ0 (Residues: 1-653; Coverage: 100%)
Gene name: nup85
Sequence domains: Nup85 Nucleoporin
Nucleoporin Nup43 Chains: B, K
Molecule details ›
Chains: B, K
Length: 375 amino acids
Theoretical weight: 41.74 KDa
Source organism: Xenopus laevis
UniProt:
  • Canonical: Q05AW3 (Residues: 1-375; Coverage: 100%)
Gene names: MGC154553, nup43, nup43.S
Sequence domains: WD domain, G-beta repeat
Nucleoporin SEH1-A Chains: C, L
Nucleoporin 160kDa Chains: D, M
Nucleoporin Nup37 Chains: E, N
Nuclear pore complex protein Nup98-Nup96 Chains: F, O
Protein SEC13 homolog Chains: G, P
Nuclear pore complex protein Chains: H, Q
Nucleoporin Nup133/Nup155-like N-terminal domain-containing protein Chains: I, R
Nucleoporin 205 Chains: S, T
Nuclear pore complex protein Nup93 Chain: U
RANBP2-like and GRIP domain-containing protein 3 isoform X2 Chains: V, W, X, Y, Z
Nucleoporin 214 L homeolog Chains: a, e
Nup88A protein Chains: b, d
Nucleoporin NSP1-like C-terminal domain-containing protein Chains: c, f

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 8.7Å
Relevant EMDB volumes: EMD-32056