7w6m

Electron Microscopy
4.7Å resolution

Cryo-EM map of PEDV (Pintung 52) S protein with all three protomers in the D0-down conformation determined in situ on intact viral particles.

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-496224 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (7 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1386 amino acids
Theoretical weight: 152.01 KDa
Source organism: Porcine epidemic diarrhea virus
Expression system: Chlorocebus aethiops aethiops
UniProt:
  • Canonical: A0A1Y0DD46 (Residues: 1-1386; Coverage: 100%)
Gene name: S
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, FUC
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA, FUC, MAN
Carbohydrate polymer : NEW Components: NAG, FUC
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.7Å
Relevant EMDB volumes: EMD-32329
Expression system: Chlorocebus aethiops aethiops