1 bound ligand:
SE 401(A)
Environment details ›
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setting document base to "https://www.ebi.ac.uk/pdbe/entry/pdb/7w9g/ligands"
(C) 2012 Jmol Development
Jmol Version: 14.3.6_2014.08.17b 2014-08-17 17:24
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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js
script 1 started
FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/7w9g.cif)
FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/7w9g.cif
The Resolver thinks MMCif
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-- required by J.renderbio.BioShapeRenderer
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Mesh.js
TITLE: Detailed Insights into the Inhibitory Mechanism of New Ebselen Derivatives against Main Protease (M pro ) of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2).
Setting space group name to Hall:C 2y
Setting space group name to HM:C 1 2 1
found biomolecule 1: A,B,C
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js
unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
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unknown CIF bond order: sing
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unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: doub
unknown CIF bond order: doub
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unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: sing
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unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: doub
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: doub
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unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: doub
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
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unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
unknown CIF bond order: sing
Setting space group name to HM:C 1 2 1
Setting space group name to Hall:C 2y
Time for openFile(*7w9g): 1941 ms
reading 2345 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
2345 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
TITLE: Detailed Insights into the Inhibitory Mechanism of New Ebselen Derivatives against Main Protease (M pro ) of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2).
found biomolecule 1: A,B,C
Script completed
Jmol script terminated
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JV/PropertyManager.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coreprop.z.js
-- required by JV.PropertyManager
script 2 started
antialiasDisplay = true
antialiasTranslucent = true
debugScript = false
showScript = 0
chainCaseSensitive = true
measurementUnits = "angstroms"
autobond = true
forceAutoBond = true
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptcmd.z.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Halos.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptmath.z.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shapesurface/Contact.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresurface.z.js
-- required by J.shapesurface.Contact
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/MeshCollection.js
-- required by J.shapesurface.Isosurface
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/XmlUtil.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/c/HB.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/ContactPair.js
contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;
Contact pairs: 2
Contacts: 0
RasMol pseudo-hbond calculation
0 hydrogen bonds
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coretext.z.js
Script completed
Jmol script terminated