7wk9

Electron Microscopy
3.48Å resolution

SARS-CoV-2 Omicron open state spike protein in complex with S3H3 Fab

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero heptamer (preferred)
PDBe Complex ID:
PDB-CPX-210358 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1258 amino acids
Theoretical weight: 140.21 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-210, 211-1208; Coverage: 94%)
Gene names: 2, S
Sequence domains:
Heavy chain of S3H3 Fab Chains: a, c
Molecule details ›
Chains: a, c
Length: 217 amino acids
Theoretical weight: 23.62 KDa
Source organism: Mus musculus
Expression system: Mus musculus
Light chain of S3H3 Fab Chains: b, d
Molecule details ›
Chains: b, d
Length: 215 amino acids
Theoretical weight: 23.54 KDa
Source organism: Mus musculus
Expression system: Mus musculus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.48Å
Relevant EMDB volumes: EMD-32563
Expression systems:
  • Homo sapiens
  • Mus musculus