› 7wsu

Electron Microscopy
2.9Å resolution

Cryo-EM structure of the barley Yellow stripe 1 transporter in complex with Fe(III)-PDMA

Released:
DOI: 10.2210/pdb7wsu/pdb
PDB entry 7wsu coloured by chain, front view.
PDB entry 7wsu coloured by chain, side view.
PDB entry 7wsu coloured by chain, top view.
Source organism: Hordeum vulgare
Primary publication:
Uptake mechanism of iron-phytosiderophore from the soil based on the structure of yellow stripe transporter.
Yamagata A, Murata Y, Namba K, Terada T, Fukai S, Shirouzu M
Nat Commun 13 7180 (2022)
PMID: 36424382
Related structures: EMD-32767

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-221146 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Iron-phytosiderophore transporter Chains: A, B
Molecule details ›
Chains: A, B
Length: 690 amino acids
Theoretical weight: 76.07 KDa
Source organism: Hordeum vulgare
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: M0XJI0 (Residues: 1-678; Coverage: 100%)
Sequence domains: OPT oligopeptide transporter protein

Ligands and Environments

3 bound ligands:
Ligand Y01 4 x Y01
Ligand FE 2 x FE
Ligand 5ZS 2 x 5ZS
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-32767
Expression system: Spodoptera frugiperda

Quick links

Citations

2 review citations

Iron sensing in plants.
Vélez-Bermúdez et al. (2023)
1 more