7x2l

X-ray diffraction
2.4Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-225242 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Spike protein S1 Chain: E
Molecule details ›
Chain: E
Length: 196 amino acids
Theoretical weight: 22 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P0DTC2 (Residues: 333-528; Coverage: 16%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding
Nanobody 3-2A2-4 Chain: B
Molecule details ›
Chain: B
Length: 122 amino acids
Theoretical weight: 13.47 KDa
Source organism: Vicugna pacos
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, FUC
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL02U1
Spacegroup: P41212
Unit cell:
a: 89.168Å b: 89.168Å c: 129.154Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.233 0.23 0.287
Expression systems:
  • Trichoplusia ni
  • Homo sapiens