MPD

(4S)-2-METHYL-2,4-PENTANEDIOL

Formula: C6 H14 O2
Molecular weight: 118 Da

Environment details NEW

MPD 505 bound to chain A_2
hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)

aromatic
clashes

covalent
electrostatic

metal hydrophobic

vdw
TRP53SER127SER130PHE131ASP184HOH648HOH701HOH734HOH735
The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.