7xdb

Electron Microscopy
2.62Å resolution

Cryo-EM structure of SARS-CoV-2 Omicron Spike protein in complex with BA7208 fab

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-225401 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (4 distinct):
BA7208 fab Chains: E, F, H
Molecule details ›
Chains: E, F, H
Length: 106 amino acids
Theoretical weight: 11.63 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1116 amino acids
Theoretical weight: 124.04 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 26-210, 211-211, 215-1144; Coverage: 88%)
Gene names: 2, S
Sequence domains:
BA7208 fab Chains: D, G, I
Molecule details ›
Chains: D, G, I
Length: 118 amino acids
Theoretical weight: 13.18 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.62Å
Relevant EMDB volumes: EMD-33142
Expression system: Homo sapiens