7xjz

Electron Microscopy
3.9Å resolution

Cryo-EM strucrture of Oryza sativa plastid glycyl-tRNA synthetase in complex with tRNA (tRNA binding state)

Released:

Function and Biology Details

Reaction catalysed:
ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly)
Biochemical function:
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-216396 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
glycine--tRNA ligase Chain: A
Molecule details ›
Chain: A
Length: 1045 amino acids
Theoretical weight: 117.05 KDa
Source organism: Oryza sativa Japonica Group
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q0DFB6 (Residues: 43-1068; Coverage: 98%)
Gene names: OSNPB_060103600, Os06g0103600, OsJ_19814
Sequence domains:
tRNA(gly) Chain: B
Molecule details ›
Chain: B
Length: 74 nucleotides
Theoretical weight: 23.91 KDa
Source organism: Oryza sativa
Expression system: in vitro transcription vector pT7-TP(deltai)
Sequence domains: tRNA

Ligands and Environments

No bound ligands
1 modified residue:

Experiments and Validation Details

Entry percentile scores
Resolution: 3.9Å
Relevant EMDB volumes: EMD-33238
Expression systems:
  • Escherichia coli BL21(DE3)
  • in vitro transcription vector pT7-TP(deltai)