7xk3

Electron Microscopy
3.1Å resolution

Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae, state 1

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-107567 (preferred)
Entry contents:
6 distinct polypeptide molecules
Macromolecules (6 distinct):
Na(+)-translocating NADH-quinone reductase subunit A Chain: A
Molecule details ›
Chain: A
Length: 446 amino acids
Theoretical weight: 48.68 KDa
Source organism: Vibrio cholerae O395
Expression system: Vibrio cholerae
UniProt:
  • Canonical: A5F5X1 (Residues: 1-446; Coverage: 100%)
Gene names: VC0395_A1884, VC395_2411, nqrA
Sequence domains:
Na(+)-translocating NADH-quinone reductase subunit B Chain: B
Molecule details ›
Chain: B
Length: 415 amino acids
Theoretical weight: 45.39 KDa
Source organism: Vibrio cholerae O395
Expression system: Vibrio cholerae
UniProt:
  • Canonical: A5F5X0 (Residues: 1-415; Coverage: 100%)
Gene names: VC0395_A1883, VC395_2410, nqrB
Sequence domains: NQR2, RnfD, RnfE family
Na(+)-translocating NADH-quinone reductase subunit C Chain: C
Molecule details ›
Chain: C
Length: 257 amino acids
Theoretical weight: 27.65 KDa
Source organism: Vibrio cholerae O395
Expression system: Vibrio cholerae
UniProt:
  • Canonical: A5F5Y7 (Residues: 1-257; Coverage: 100%)
Gene names: VC0395_A1882, VC395_2409, nqrC
Sequence domains: FMN-binding domain
Na(+)-translocating NADH-quinone reductase subunit D Chain: D
Molecule details ›
Chain: D
Length: 210 amino acids
Theoretical weight: 22.85 KDa
Source organism: Vibrio cholerae O395
Expression system: Vibrio cholerae
UniProt:
  • Canonical: A5F5Y6 (Residues: 1-210; Coverage: 100%)
Gene names: VC0395_A1881, VC395_2408, nqrD
Sequence domains: Rnf-Nqr subunit, membrane protein
Na(+)-translocating NADH-quinone reductase subunit E Chain: E
Molecule details ›
Chain: E
Length: 198 amino acids
Theoretical weight: 21.48 KDa
Source organism: Vibrio cholerae O395
Expression system: Vibrio cholerae
UniProt:
  • Canonical: A5F5Y5 (Residues: 1-198; Coverage: 100%)
Gene names: VC0395_A1880, VC395_2407, nqrE
Sequence domains: Rnf-Nqr subunit, membrane protein
Na(+)-translocating NADH-quinone reductase subunit F Chain: F
Molecule details ›
Chain: F
Length: 414 amino acids
Theoretical weight: 45.94 KDa
Source organism: Vibrio cholerae O395
Expression system: Vibrio cholerae
UniProt:
  • Canonical: A5F5Y4 (Residues: 1-408; Coverage: 100%)
Gene names: VC0395_A1879, VC395_2406, nqrF
Sequence domains:

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.1Å
Relevant EMDB volumes: EMD-33242
Expression system: Vibrio cholerae