› 7xlv

X-ray diffraction
1.1Å resolution

Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (G7I mutant)

Released:
DOI: 10.2210/pdb7xlv/pdb
PDB entry 7xlv coloured by chain, front view.
PDB entry 7xlv coloured by chain, side view.
PDB entry 7xlv coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
The effect of inosine on the spectroscopic properties and crystal structure of a NIR-emitting DNA-stabilized silver nanocluster.
Cerretani C, Liisberg MB, Rück V, Kondo J, Vosch T
OpenAccess logo Nanoscale Adv 4 3212-3217 (2022)
PMID: 36132821

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122305 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*AP*CP*CP*TP*AP*IP*CP*GP*A)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand MPD 1 x MPD
Ligand AG 19 x AG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P212121
Unit cell:
a: 24.212Å b: 41.474Å c: 45.301Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.103 0.102 0.11
Expression system: Not provided

Quick links

Citations

4 citation in other articles

Chloride Ligands on DNA-Stabilized Silver Nanoclusters.
Gonzàlez-Rosell et al. (2023)
3 more

1 mention without citation

The effect of inosine on the spectroscopic properties and crystal structure of a NIR-emitting DNA-stabilized silver nanocluster.
Cerretani et al. (2022)