7xny

Electron Microscopy
2.5Å resolution

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Released:

Function and Biology Details

Reaction catalysed:
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero 79-mer (preferred)
PDBe Complex ID:
PDB-CPX-199794 (preferred)
Entry contents:
75 distinct polypeptide molecules
4 distinct RNA molecules
Macromolecules (79 distinct):
Large ribosomal subunit protein uL2 Chain: LA
Molecule details ›
Chain: LA
Length: 257 amino acids
Theoretical weight: 28.09 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P62917 (Residues: 1-257; Coverage: 100%)
Gene name: RPL8
Sequence domains:
Large ribosomal subunit protein uL3 Chain: LB
Molecule details ›
Chain: LB
Length: 403 amino acids
Theoretical weight: 46.21 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P39023 (Residues: 1-403; Coverage: 100%)
Gene names: OK/SW-cl.32, RPL3
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4 Chain: LC
Large ribosomal subunit protein uL18 Chain: LD
Large ribosomal subunit protein eL6 Chain: LE
Large ribosomal subunit protein uL30 Chain: LF
Large ribosomal subunit protein eL8 Chain: LG
Large ribosomal subunit protein uL6 Chain: LH
Ribosomal protein L10 isoform A Chain: LI
Large ribosomal subunit protein uL5 Chain: LJ
Large ribosomal subunit protein eL13 Chain: LL
Large ribosomal subunit protein eL14 Chain: LM
Large ribosomal subunit protein eL15 Chain: LN
Large ribosomal subunit protein uL13 Chain: LO
Large ribosomal subunit protein uL22 Chain: LP
Large ribosomal subunit protein eL18 Chain: LQ
Large ribosomal subunit protein eL19 Chain: LR
Large ribosomal subunit protein eL20 Chain: LS
Large ribosomal subunit protein eL21 Chain: LT
Large ribosomal subunit protein eL22 Chain: LU
Large ribosomal subunit protein uL14 Chain: LV
Large ribosomal subunit protein eL24 Chain: LW
Large ribosomal subunit protein uL23 Chain: LX
Large ribosomal subunit protein uL24 Chain: LY
60S ribosomal protein L27 Chain: LZ
Large ribosomal subunit protein uL15 Chain: La
Large ribosomal subunit protein eL29 Chain: Lb
Large ribosomal subunit protein eL30 Chain: Lc
Large ribosomal subunit protein eL31 Chain: Ld
Large ribosomal subunit protein eL32 Chain: Le
Large ribosomal subunit protein eL33 Chain: Lf
Large ribosomal subunit protein eL34 Chain: Lg
Large ribosomal subunit protein uL29 Chain: Lh
Large ribosomal subunit protein eL36 Chain: Li
Large ribosomal subunit protein eL37 Chain: Lj
Large ribosomal subunit protein eL38 Chain: Lk
Large ribosomal subunit protein eL39 Chain: Ll
Ubiquitin-ribosomal protein eL40 fusion protein Chain: Lm
Small ribosomal subunit protein eS32 Chain: Ln
Ribosomal protein L36a Chain: Lo
Large ribosomal subunit protein eL43 Chain: Lp
Large ribosomal subunit protein eL28 Chain: Lr
Small ribosomal subunit protein uS2 Chain: SA
Small ribosomal subunit protein eS1 Chain: SB
Small ribosomal subunit protein uS3 Chain: SD
Small ribosomal subunit protein eS4, X isoform Chain: SE
Small ribosomal subunit protein uS7 Chain: SF
Small ribosomal subunit protein eS7 Chain: SH
Small ribosomal subunit protein eS8 Chain: SI
Small ribosomal subunit protein eS10 Chain: SK
Small ribosomal subunit protein uS17 Chain: SL
Small ribosomal subunit protein uS19 Chain: SP
Small ribosomal subunit protein uS9 Chain: SQ
Small ribosomal subunit protein eS17 Chain: SR
Small ribosomal subunit protein uS13 Chain: SS
Small ribosomal subunit protein eS19 Chain: ST
Small ribosomal subunit protein uS10 Chain: SU
Small ribosomal subunit protein eS21 Chain: SV
Small ribosomal subunit protein uS12 Chain: SX
Small ribosomal subunit protein eS26 Chain: Sa
Small ribosomal subunit protein eS28 Chain: Sc
Small ribosomal subunit protein uS14 Chain: Sd
Small ribosomal subunit protein RACK1 Chain: Sg
Small ribosomal subunit protein uS5 Chain: SC
Small ribosomal subunit protein eS6 Chain: SG
Small ribosomal subunit protein uS4 Chain: SJ
Small ribosomal subunit protein eS12 Chain: SM
Small ribosomal subunit protein uS15 Chain: SN
Small ribosomal subunit protein uS11 Chain: SO
Small ribosomal subunit protein uS8 Chain: SW
Small ribosomal subunit protein eS24 Chain: SY
Small ribosomal subunit protein eS25 Chain: SZ
Small ribosomal subunit protein eS27 Chain: Sb
Small ribosomal subunit protein eS30 Chain: Se
Ubiquitin-ribosomal protein eS31 fusion protein Chain: Sf
28S ribosomal RNA Chain: L1
5S ribosomal RNA Chain: L2
5.8S ribosomal RNA Chain: L3
18S Ribosomal RNA Chain: S2

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 2.5Å
Relevant EMDB volumes: EMD-33330