› 7xpg

Electron Microscopy
3.51Å resolution

Cryo-EM structure of the T=3 lake sinai virus 1 (delta-N48) virus-like capsid at pH 6.5

Released:
DOI: 10.2210/pdb7xpg/pdb
PDB entry 7xpg coloured by chain, front view.
PDB entry 7xpg coloured by chain, side view.
PDB entry 7xpg coloured by chain, top view.
Source organisms:
Primary publication:
Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions.
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
OpenAccess logo Nat Commun 14 545 (2023)
PMID: 36726015
Related structures: EMD-33373

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
hetero 360-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-103959 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
Capsid protein alpha Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 565 amino acids
Theoretical weight: 62.98 KDa
Source organism: Lake Sinai virus 1
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A223DNC8 (Residues: 1-565; Coverage: 100%)
RNA (5'-R(P*UP*G)-3') Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 2 nucleotides
Theoretical weight: 606 Da
Source organism: Escherichia coli
Expression system: Escherichia coli

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.51Å
Relevant EMDB volumes: EMD-33373
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Recent Advances in Molecular and Immunological Diagnostic Platform for Virus Detection: A Review.
Trinh et al. (2023)
1 other article