7y6s

Electron Microscopy
3.1Å resolution

Cryo-EM map of IPEC-J2 cell-derived PEDV PT52 S protein with three D0-up

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-103881 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (7 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1384 amino acids
Theoretical weight: 151.61 KDa
Source organism: Porcine epidemic diarrhea virus
Expression system: Sus scrofa
UniProt:
  • Canonical: A0A1Y0DD46 (Residues: 19-1327; Coverage: 94%)
Gene name: S
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, FUC
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, FUC
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.1Å
Relevant EMDB volumes: EMD-33646
Expression system: Sus scrofa